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Congenital muscular dystrophy and congenital myopathy

Gene: SLC25A42

Amber List (moderate evidence)

SLC25A42 (solute carrier family 25 member 42)
EnsemblGeneIds (GRCh38): ENSG00000181035
EnsemblGeneIds (GRCh37): ENSG00000181035
OMIM: 610823, Gene2Phenotype
SLC25A42 is in 6 panels

5 reviews

Ivone Leong (Genomics England Curator)

Comment on list classification: Promoted from Red to Amber. This gene is associated with a phenotype in OMIM but not in Gene2Phenotype. Currently there is not enough evidence to support a gene-disease association. This gene has been given an Amber rating.
Created: 30 Jun 2021, 2:08 p.m. | Last Modified: 30 Jun 2021, 2:08 p.m.
Panel Version: 2.39

Zornitza Stark (Australian Genomics)

I don't know

2 additional publications found but only a single additional variant identified. Condition is broader in scope than 'congenital myopathy' though initial presentation may be with hypotonia.

PMID: 26541337: 1 16 yo patient from a consanguineous family reported with a missense variant (N291D), presenting with mitochondrial myopathy. Zebrafish slc25a42 knockdown showed muscle weakness.

PMID: 29923093: Reported two patients, one with the missense variant (N291D) previously described and an additional hom splice variant shown to result in aberrant splicing. The patients were aged 6 and 9 and both presented with muscular hypotonia. The patient harbouring the splice variant also presented with rhabdomyolysis.

PMID: 29327420: 12 patients reported with the same N291D variant.
Created: 15 Jun 2020, 8:57 a.m. | Last Modified: 15 Jun 2020, 8:57 a.m.
Panel Version: 2.5

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Metabolic crises, recurrent, with variable encephalomyopathic features and neurologic regression (MIM#618416)

Publications

Anna Sarkozy (Great Ormond Street Hospital)

Red List (low evidence)

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
muscle weakness, lactic acidosis, and muscle changes suggestive of mitochondrial dysfunction

Publications

Helen Brittain (Genomics England Curator)

Red List (low evidence)

Comment when marking as ready: Insufficient evidence
Created: 3 Feb 2017, 1:56 p.m.
Comment on list classification: Only one report. Insufficient evidence at present
Created: 3 Feb 2017, 1:56 p.m.
No OMIM phenotype assigned. One case report of a Saudi consanguineous family with one individual with mitochondrial myopathy. Therefore not sufficient evidence for association at present.
Created: 31 Jan 2017, 1:43 p.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Publications

Ellen McDonagh (Genomics England Curator)

Novel association reported in PMID: 26541337
Created: 25 Aug 2016, 12:37 p.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
muscle weakness, lactic acidosis, and muscle changes suggestive of mitochondrial dysfunction

Publications

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Literature
  • Expert Review Amber
Phenotypes
  • Metabolic crises, recurrent, with variable encephalomyopathic features and neurologic regression, OMIM:618416
Tags
watchlist
OMIM
610823
Clinvar variants
Variants in SLC25A42
Penetrance
Complete
Publications
Panels with this gene

History Filter Activity

6 Feb 2023, Gel status: 2

Created, Added New Source, Added Tag, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance

Arina Puzriakova (Genomics England Curator)

gene: SLC25A42 was added gene: SLC25A42 was added to Congenital muscular dystrophy and congenital myopathy. Sources: Expert Review Amber,Literature watchlist tags were added to gene: SLC25A42. Mode of inheritance for gene: SLC25A42 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: SLC25A42 were set to 26541337; 29923093; 29327420 Phenotypes for gene: SLC25A42 were set to Metabolic crises, recurrent, with variable encephalomyopathic features and neurologic regression, OMIM:618416 Penetrance for gene: SLC25A42 were set to Complete