- Panels
- Newborns main panel
- SMPD1
- AAAS 1
- ABCB11 1
- ABCB4 1
- ABCC6 1
- ABCC8 2
- ABCD1 1
- ABCD4 1
- ACAD9 1
- ACADM 1
- ACADVL 2
- ACAT1 1
- ACOX2 1
- ADA 2
- ADA2 1
- ADAMTS13 1
- AGL 1
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- AGRN 2
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- AKR1D1 1
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- ALG14 2
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- ALPL 2
- AMACR 1
- AMH 1
- AMHR2 1
- AMN 1
- ANOS1 1
- AP3B1 1
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- CD320 1
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- G6PD 1
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- GALM 1
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- GATA2 1
- GATA4 1
- GATA6 1
- GBA 2
- GCH1 1
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- GLA 1
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- GNE 1
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- HAMP 1
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- HMBS 1
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- PSMB4 1
- PSMB8 1
- PSMB9 1
- PSMG2 1
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- SCN3A 1
- SCN5A 2
- SCN8A 3
- SERPINA1 1
- SERPING1 2
- SFTPC 1
- SLC13A5 1
- SLC16A1 1
- SLC16A2 1
- SLC18A2 1
- SLC1A3 1
- SLC25A38 1
- SLC26A3 2
- SLC26A4 1
- SLC2A2 1
- SLC35A2 1
- SLC35C1 1
- SLC39A14 1
- SLC39A8 1
- SLC40A1 1
- SLC4A4 1
- SLC5A6 1
- SLC6A5 1
- SLC6A6 1
- SLC6A8 1
- SLC9A3 2
- SLX4 1
- SMARCA4 1
- SMARCB1 1
- SMPD1 1
- SNAP25 1
- SORD 1
- SOX3 1
- SPINT2 2
- SPR 1
- SPTLC1 1
- SPTLC2 1
- STIM1 1
- STX16 1
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- AP2S1 1
- APC 1
- BMPR1A 1
- CHD7 1
- GNA11 1
- HFE 1
- HNF4A 1
- KL 1
- KLF11 1
- MUTYH 1
- NF1 1
- PKD1 1
- PKD2 1
- SCARB2 1
- SLC12A3 1
- SLC30A2 1
- SMAD4 1
- TNFRSF13B 1
- UCP2 1
- WDR72 1
- WFS1 1
Newborns main panel
Gene: SMPD1 Amber List (moderate evidence)EnsemblGeneIds (GRCh38): ENSG00000166311
EnsemblGeneIds (GRCh37): ENSG00000166311
OMIM: 607608, Gene2Phenotype
SMPD1 is in 13 panels
1 review
Mafalda Gomes (Genomics England Curator)
The mechanism of pathogenicity is loss-of-function (LOF).Created: 1 Jun 2023, 2:40 p.m. | Last Modified: 1 Jun 2023, 2:40 p.m.
Panel Version: 0.137
https://search.clinicalgenome.org/kb/genes/HGNC:11120Created: 1 Jun 2023, 12:22 p.m. | Last Modified: 1 Jun 2023, 12:22 p.m.
Panel Version: 0.135
Last Modified: 1 Jun 2023, 12:22 p.m.
Panel version: 0.137
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Amber
- Phenotypes
-
- Niemann-Pick disease, type A and type B
- OMIM
- 607608
- Clinvar variants
- Variants in SMPD1
- Penetrance
- None
- Panels with this gene
-
- Cholestasis
- Likely inborn error of metabolism
- Intellectual disability
- Niemann-Pick disease type A or B
- Familial pulmonary fibrosis
- Undiagnosed metabolic disorders
- Fetal anomalies
- DDG2P
- Neonatal cholestasis
- Hyperammonaemia
- Fetal hydrops
- Childhood onset dystonia, chorea or related movement disorder
- Lysosomal storage disorder
History Filter Activity
Added New Source, Set Phenotypes, Status Update
Mafalda Gomes (Genomics England Curator)Source Expert Review Amber was added to SMPD1. Added phenotypes Niemann-Pick disease, type A and type B for gene: SMPD1 Rating Changed from Green List (high evidence) to Amber List (moderate evidence)
Added New Source, Set Phenotypes, Status Update
Mafalda Gomes (Genomics England Curator)Source Expert Review Green was added to SMPD1. Added phenotypes Niemann-Pick disease, type A and type B for gene: SMPD1 Rating Changed from Amber List (moderate evidence) to Green List (high evidence)
Added New Source, Set Phenotypes, Status Update
Mafalda Gomes (Genomics England Curator)Source Expert Review Amber was added to SMPD1. Added phenotypes Niemann-Pick disease, type A and type B for gene: SMPD1 Rating Changed from Green List (high evidence) to Amber List (moderate evidence)
Added New Source, Set Phenotypes, Status Update
Mafalda Gomes (Genomics England Curator)Source Expert Review Green was added to SMPD1. Added phenotypes Niemann-Pick disease, type A and type B for gene: SMPD1 Rating Changed from No List (delete) to Green List (high evidence)
Created, Added New Source, Set mode of inheritance, Set Phenotypes
Mafalda Gomes (Genomics England Curator)gene: SMPD1 was added gene: SMPD1 was added to Newborns main panel. Sources: Expert Review Removed Mode of inheritance for gene: SMPD1 was set to BIALLELIC, autosomal or pseudoautosomal Phenotypes for gene: SMPD1 were set to Niemann-Pick disease, type A and type B