Congenital muscular dystrophy

Gene: TK2

Amber List (moderate evidence)

TK2 (thymidine kinase 2, mitochondrial)
EnsemblGeneIds (GRCh38): ENSG00000166548
EnsemblGeneIds (GRCh37): ENSG00000166548
OMIM: 188250, Gene2Phenotype
TK2 is in 15 panels

2 reviews

Ida Ertmanska (Genomics England Curator)

Green List (high evidence)

Comment on list classification: There are numerous patients reported in literature with biallelic variants in TK2 and mitochondrial myopathy. More than 25 cases have been reported with rapidly progressive infantile-onset (<1year of age) muscle weakness, usually leading to respiratory failure before age 3. Based on available evidence TK2 should be promoted to Green for Congenital muscular dystrophy at the next GMS update.
Created: 15 Dec 2025, 12:08 p.m. | Last Modified: 15 Dec 2025, 12:08 p.m.
Panel Version: 6.4
PMID: 18819985 Gotz et al., 2008
Reported 7 patients with rapidly progressive myopathy / encephalomyopathy, leading to respiratory failure within first 3 years of life. Myopathy onset reported at 3-18 months old. Elevated CK and COX-negatvie fibers were noted.
Patients were homozygous or compound het for Scandinavian founder mutations: p.R172W (NM_004614.5(TK2):c.388C>T (p.Arg130Trp)) & R225W (NM_004614.5(TK2):c.547C>T (p.Arg183Trp)).

PMID: 38544965 Ceballos et al., 2024
Cohort of 53 Spanish patients with biallelic variants in TK2 diagnosed with mitochondrial myopathy. 40% of patients presented with disease before 12yo; 4 patients (7.5%) presented with disease within the first year of life.

PMID: 40098049 Li et al., 2025
Female patient with early-onset lipid storage myopathy (onset at 8 months old); compound het variants in TK2: c.311G > A (p.Arg104His) and a deletion spanning TK2 exons 5-10 (g.66545871_66565372del); COX negative fibers and accumulation of lipid droplets noted on biceps biopsy; detected decrease in TK2 protein and mtDNA copy number in patient muscle samples. Patient passed at 13 months due to respiratory distress.

Based on literature review of 50 TK2-related myopathy cases, authors note that the same TK2 variant may cause variable onset and severity of disease between patients. Variable presentation of limb girdle muscle weakness, ptosis, respiratory failure, and facial weakness; range of congenital to adult disease onset. 15/50 cases in the review had onset under 1yo.

TK2 is associated with AR Mitochondrial DNA depletion syndrome 2 (myopathic type), MIM:609560 and putatively associated with AR Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3, MIM:617069 (OMIM accessed 15th Dec 2025).
Created: 15 Dec 2025, 12:03 p.m. | Last Modified: 15 Dec 2025, 12:03 p.m.
Panel Version: 6.4

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Mitochondrial DNA depletion syndrome 2 (myopathic type), OMIM:609560; mitochondrial DNA depletion syndrome, myopathic form, MONDO:0012301

Publications

William Macken (North Thames GMS)

Green List (high evidence)

Sources: NHS GMS, TK2 is on a mitochondrial panel however, it causes a muscle predominant phenotype and should be present on congenital muscular dystrophy, LGMD and as a consequence other rare neuromuscular disorders and hypotonic infant
Created: 3 Dec 2025, 10:15 a.m. | Last Modified: 3 Dec 2025, 10:17 a.m.
Panel Version: 6.1

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Congenital muscular dystrophy; mitochondrial disease; limb girdle muscular dystrophy

Publications

Mode of pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments

Variants in this GENE are reported as part of current diagnostic practice

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Mitochondrial DNA depletion syndrome 2 (myopathic type), OMIM:609560
  • mitochondrial DNA depletion syndrome, myopathic form, MONDO:0012301
Tags
Q4_25_promote_green Q4_25_NHS_review
OMIM
188250
Clinvar variants
Variants in TK2
Penetrance
Complete
Publications
Mode of Pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
Panels with this gene

History Filter Activity

15 Dec 2025, Gel status: 2

Set publications

Ida Ertmanska (Genomics England Curator)

Publications for gene: TK2 were set to 11687801 18021809 19736010 16831967 36146520

15 Dec 2025, Gel status: 2

Set Phenotypes

Ida Ertmanska (Genomics England Curator)

Phenotypes for gene: TK2 were changed from Congenital muscular dystrophy; mitochondrial disease; limb girdle muscular dystrophy to Mitochondrial DNA depletion syndrome 2 (myopathic type), OMIM:609560; mitochondrial DNA depletion syndrome, myopathic form, MONDO:0012301

15 Dec 2025, Gel status: 2

Entity classified by Genomics England curator

Ida Ertmanska (Genomics England Curator)

Gene: tk2 has been classified as Amber List (Moderate Evidence).

15 Dec 2025, Gel status: 0

Added Tag, Added Tag

Ida Ertmanska (Genomics England Curator)

Tag Q4_25_promote_green tag was added to gene: TK2. Tag Q4_25_NHS_review tag was added to gene: TK2.

3 Dec 2025, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance, Set mode of pathogenicity

William Macken (North Thames GMS)

gene: TK2 was added gene: TK2 was added to Congenital muscular dystrophy. Sources: NHS GMS Mode of inheritance for gene: TK2 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: TK2 were set to 11687801 18021809 19736010 16831967 36146520 Phenotypes for gene: TK2 were set to Congenital muscular dystrophy; mitochondrial disease; limb girdle muscular dystrophy Penetrance for gene: TK2 were set to Complete Mode of pathogenicity for gene: TK2 was set to Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments Review for gene: TK2 was set to GREEN gene: TK2 was marked as current diagnostic