Deafness and congenital structural abnormalities

Gene: DAP3

Green List (high evidence)

DAP3 (death associated protein 3)
EnsemblGeneIds (GRCh38): ENSG00000132676
EnsemblGeneIds (GRCh37): ENSG00000132676
OMIM: 602074, Gene2Phenotype
DAP3 is in 3 panels

2 reviews

Achchuthan Shanmugasundram (Genomics England Curator)

Green List (high evidence)

Comment on list classification: There is sufficient evidence available (five unrelated cases and functional work) for the promotion of this gene to green rating on this panel.
Created: 22 Mar 2025, 2:50 p.m. | Last Modified: 22 Mar 2025, 2:50 p.m.
Panel Version: 1.30
PMID:39701103 reported the identification of biallelic variants in DAP3 gene in five unrelated individuals presenting with variable clinical presentations ranging from Perrault syndrome (sensorineural hearing loss and ovarian insufficiency) to an early childhood neurometabolic phenotype. All five individuals had bilateral sensorineural hearing loss and the severity was profound in three of them, while not reported in the other two. Severe intellectual disability was reported in one individual and mild ID was reported in two individuals. There is also functional evidence available.

This gene has been associated with relevant phenotypes in OMIM (MIM #621101), but not yet in Gene2Phenotype.
Created: 22 Mar 2025, 2:49 p.m. | Last Modified: 22 Mar 2025, 10:37 p.m.
Panel Version: 1.30

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Perrault syndrome 7, OMIM:621101

Publications

Bill Newman (Manchester Centre for Genomic Medicine)

Green List (high evidence)

This is a new description of hypomorphic biallelic variants resulting in a multi system disorder including SNHL
Biallelic LoF variants are unlikely to viable
Sources: Literature
Created: 2 Mar 2025, 9:34 a.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Sensorineural hearing loss; primary ovarian insufficiency; lactic acidosis; intellectual disability

Publications

Mode of pathogenicity
Other

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Perrault syndrome 7, OMIM:621101
OMIM
602074
Clinvar variants
Variants in DAP3
Penetrance
Complete
Publications
Mode of Pathogenicity
Other
Panels with this gene

History Filter Activity

22 Mar 2025, Gel status: 3

Entity classified by Genomics England curator

Achchuthan Shanmugasundram (Genomics England Curator)

Gene: dap3 has been classified as Green List (High Evidence).

22 Mar 2025, Gel status: 0

Set publications

Achchuthan Shanmugasundram (Genomics England Curator)

Publications for gene: DAP3 were set to PMID:39701103

22 Mar 2025, Gel status: 0

Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

Phenotypes for gene: DAP3 were changed from Sensorineural hearing loss; primary ovarian insufficiency; lactic acidosis; intellectual disability to Perrault syndrome 7, OMIM:621101

2 Mar 2025, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance, Set mode of pathogenicity

Bill Newman (Manchester Centre for Genomic Medicine)

gene: DAP3 was added gene: DAP3 was added to Deafness and congenital structural abnormalities. Sources: Literature Mode of inheritance for gene: DAP3 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: DAP3 were set to PMID:39701103 Phenotypes for gene: DAP3 were set to Sensorineural hearing loss; primary ovarian insufficiency; lactic acidosis; intellectual disability Penetrance for gene: DAP3 were set to Complete Mode of pathogenicity for gene: DAP3 was set to Other Review for gene: DAP3 was set to GREEN