Genes in panel
- AARS2 1
- AASS 1
- ABAT 1
- ABCA1 1
- ABCB11 1
- ABCB4 1
- ABCB7 2
- ABCD1 2
- ABCD4 1
- ABCG5 1
- ABCG8 1
- ABHD12 1
- ABHD5 1
- ACAD8 1
- ACAD9 2
- ACADM 2
- ACADS 1
- ACADSB 1
- ACADVL 2
- ACAT1 0
- ACO2 1
- ACOX1 1
- ACSF3 1
- ACY1 1
- ADA 3
- ADAR 1
- ADSL 1
- AFG3L2 0
- AGA 1
- AGK 0
- AGL 1
- AGPS 0
- AGXT 0
- AHCY 2
- AIFM1 0
- AKR1D1 1
- ALAD 1
- ALAS2 1
- ALDH18A1 1
- ALDH3A2 1
- ALDH4A1 1
- ALDH5A1 1
- ALDH6A1 1
- ALDH7A1 2
- ALDOA 1
- ALDOB 0
- ALG1 0
- ALG11 0
- ALG12 0
- ALG14 1
- ALG3 0
- ALG6 0
- ALG8 0
- ALG9 0
- ALPL 1
- AMACR 0
- AMN 1
- AMT 1
- ANO10 0
- APOA1 1
- APOA5 1
- APOB 1
- APOC2 1
- APOE 1
- APOPT1 1
- APRT 1
- APTX 0
- ARG1 0
- ARSA 1
- ARSB 0
- ARSE 1
- ASAH1 1
- ASL 0
- ASPA 1
- ASS1 0
- ATAD3A 4
- ATIC 2
- ATP13A2 1
- ATP5A1 3
- ATP5E 2
- ATP6AP1 0
- ATP6V0A2 0
- ATP7A 3
- ATP7B 1
- ATP8B1 1
- ATPAF2 0
- AUH 0
- B3GALNT2 0
- B3GALT6 0
- B3GAT3 0
- B3GLCT 1
- B4GALT1 0
- B4GALT7 0
- BAAT 1
- BCKDHA 0
- BCKDHB 0
- BCKDK 1
- BCS1L 0
- BOLA3 0
- BTD 0
- C12orf65 1
- C19orf12 1
- CA5A 1
- CAT 0
- CBS 2
- CCDC115 1
- CHCHD10 1
- CHKB 0
- CHST14 0
- CHST3 0
- CHST6 0
- CHSY1 0
- CISD2 1
- CLDN16 1
- CLDN19 1
- CLN3 1
- CLN5 1
- CLN6 1
- CLN8 1
- CLPB 1
- CLPP 0
- CNNM2 1
- COG1 0
- COG4 0
- COG5 0
- COG6 0
- COG7 0
- COG8 0
- COQ2 1
- COQ4 0
- COQ6 0
- COQ7 1
- COQ8A 1
- COQ8B 1
- COQ9 0
- COX10 0
- COX14 0
- COX15 0
- COX20 0
- COX6A1 0
- COX6B1 0
- COX7B 0
- CP 1
- CPOX 3
- CPS1 0
- CPT1A 0
- CPT2 2
- CTH 1
- CTNS 1
- CTSA 1
- CTSC 1
- CTSD 1
- CTSK 1
- CUBN 1
- CYC1 0
- CYP27A1 1
- CYP7B1 1
- D2HGDH 1
- DARS 1
- DARS2 0
- DBH 2
- DBT 0
- DCXR 2
- DDC 2
- DGUOK 0
- DHCR24 1
- DHCR7 2
- DHFR 0
- DHODH 1
- DHTKD1 1
- DLAT 0
- DLD 0
- DNA2 0
- DNAJC12 1
- DNAJC19 2
- DNAJC5 1
- DNM1L 0
- DNM2 1
- DOLK 0
- DPAGT1 0
- DPM1 0
- DPM2 1
- DPM3 3
- DPYD 2
- DPYS 1
- DYM 0
- EARS2 0
- EBP 1
- ECHS1 0
- ELAC2 0
- ENO3 2
- EPG5 1
- EPM2A 1
- ETFA 1
- ETFB 2
- ETFDH 1
- ETHE1 0
- EXT1 0
- EXT2 0
- FA2H 1
- FAH 1
- FAR1 0
- FARS2 0
- FASTKD2 0
- FBP1 0
- FBXL4 0
- FDX2 1
- FECH 2
- FGFR2 1
- FH 0
- FKRP 0
- FKTN 0
- FMO3 2
- FOLR1 0
- FOXRED1 0
- FTCD 2
- FUCA1 1
- FUT8 1
- FXN 1
- G6PC 1
- G6PC3 1
- GAA 2
- GABRG2 1
- GALC 1
- GALE 1
- GALK1 1
- GALNS 0
- GALNT3 0
- GALT 1
- GAMT 2
- GARS 1
- GATM 0
- GBA 1
- GBE1 1
- GCDH 1
- GCH1 1
- GCLC 1
- GDAP1 1
- GFER 0
- GFM1 0
- GFPT1 0
- GIF 2
- GK 1
- GLA 0
- GLB1 0
- GLDC 1
- GLRA1 1
- GLRX5 0
- GLUD1 0
- GLUL 1
- GLYCTK 1
- GM2A 1
- GMPPB 0
- GNE 0
- GNMT 1
- GNPAT 0
- GNPTAB 0
- GNPTG 0
- GNS 0
- GPD1 1
- GPHN 1
- GRHPR 0
- GSS 1
- GTPBP3 0
- GUSB 0
- GYG1 2
- GYS1 2
- GYS2 0
- HAAO 1
- HADH 1
- HADHA 1
- HADHB 1
- HAMP 1
- HARS2 2
- HCCS 0
- HCFC1 1
- HEXA 1
- HEXB 1
- HFE 1
- HFE2 2
- HGD 1
- HGSNAT 0
- HIBCH 0
- HLCS 0
- HMBS 2
- HMGCL 0
- HMGCS2 1
- HOGA1 0
- HPD 1
- HPRT1 1
- HPS1 1
- HS2ST1 1
- HSD17B10 1
- HSD17B4 0
- HSD3B7 2
- HSPD1 0
- HTRA2 1
- HYAL1 2
- IARS2 1
- IBA57 0
- IDH2 2
- IDS 0
- IDUA 0
- IER3IP1 2
- ISCA2 1
- ISCU 2
- ISPD 1
- ITPA 1
- IVD 0
- KARS 1
- KYNU 2
- L2HGDH 1
- LAMP2 2
- LARGE1 2
- LARS 1
- LARS2 0
- LBR 1
- LCAT 1
- LCT 1
- LDHA 1
- LDLR 1
- LDLRAP1 1
- LIAS 0
- LIPA 1
- LIPT1 0
- LMBRD1 1
- LONP1 0
- LPIN1 2
- LPL 1
- LRPPRC 0
- LYRM4 2
- MAGT1 1
- MAN1B1 0
- MAN2B1 1
- MANBA 1
- MAOA 1
- MARS2 1
- MAT1A 2
- MCCC1 1
- MCCC2 1
- MCEE 0
- MCOLN1 0
- MFF 1
- MFN2 0
- MFSD8 1
- MGAT2 0
- MGME1 0
- MLYCD 0
- MMAA 0
- MMAB 0
- MMACHC 1
- MMADHC 1
- MOCS1 1
- MOCS2 1
- MOGS 1
- MPDU1 0
- MPI 0
- MPV17 0
- MRPL3 2
- MRPS22 0
- MSMO1 1
- MT-ATP6 0
- MT-ATP8 0
- MT-CO1 0
- MT-CO2 0
- MT-CO3 0
- MT-CYB 0
- MTFMT 1
- MTHFR 0
- MT-ND1 0
- MT-ND2 0
- MT-ND3 0
- MT-ND4 1
- MT-ND4L 0
- MT-ND5 0
- MT-ND6 0
- MTO1 0
- MTPAP 3
- MTR 1
- MT-RNR1 1
- MTRR 1
- MT-TA 1
- MT-TC 0
- MT-TD 0
- MT-TE 0
- MT-TF 0
- MT-TG 0
- MT-TH 0
- MT-TI 0
- MT-TK 0
- MT-TL1 0
- MT-TL2 0
- MT-TM 0
- MT-TN 0
- MTTP 1
- MT-TP 0
- MT-TQ 0
- MT-TR 0
- MT-TS1 0
- MT-TS2 0
- MT-TV 0
- MT-TW 0
- MT-TY 0
- MUT 1
- MVK 1
- NAGA 1
- NAGLU 0
- NAGS 0
- NARS2 0
- NDUFA1 1
- NDUFA10 0
- NDUFA11 0
- NDUFA12 3
- NDUFA2 0
- NDUFAF1 0
- NDUFAF2 0
- NDUFAF3 0
- NDUFAF4 0
- NDUFAF5 0
- NDUFAF6 1
- NDUFB11 0
- NDUFB3 0
- NDUFC2 1
- NDUFS1 0
- NDUFS2 0
- NDUFS3 0
- NDUFS4 0
- NDUFS6 0
- NDUFS7 0
- NDUFS8 0
- NDUFV1 0
- NDUFV2 0
- NEU1 0
- NFU1 0
- NGLY1 1
- NHLRC1 1
- NNT 1
- NPC1 1
- NPC2 1
- NSDHL 1
- NT5C3A 1
- NUBPL 0
- OAT 0
- OCRL 2
- OGDH 2
- OPA1 0
- OPA3 0
- OTC 1
- OXCT1 0
- PAH 1
- PANK2 1
- PC 0
- PCBD1 1
- PCCA 0
- PCCB 0
- PCK1 2
- PCSK9 1
- PDHA1 0
- PDHB 0
- PDHX 0
- PDP1 0
- PDSS1 0
- PDSS2 0
- PEPD 1
- PET100 0
- PEX1 0
- PEX10 0
- PEX11B 0
- PEX12 0
- PEX13 0
- PEX14 0
- PEX16 0
- PEX19 0
- PEX2 0
- PEX26 0
- PEX3 0
- PEX5 0
- PEX6 1
- PEX7 0
- PFKM 2
- PGAM2 2
- PGAP2 0
- PGAP3 0
- PGK1 2
- PGM1 1
- PGM3 0
- PHGDH 1
- PHKA1 2
- PHKA2 0
- PHKB 1
- PHKG2 0
- PHYH 0
- PIGA 0
- PIGL 0
- PIGM 3
- PIGN 0
- PIGO 0
- PIGT 1
- PIGV 0
- PINK1 1
- PLA2G6 1
- PMM2 0
- PMPCA 0
- PNP 1
- PNPO 1
- PNPT1 0
- POLG 1
- POLG2 2
- POMGNT1 0
- POMGNT2 0
- POMT1 0
- POMT2 0
- POR 1
- PPA2 0
- PPOX 2
- PPT1 1
- PRKAG2 2
- PRODH 2
- PRPS1 1
- PSAP 0
- PSAT1 1
- PTS 2
- PUS1 1
- PYCR1 0
- PYGL 0
- PYGM 1
- QDPR 1
- RARS2 0
- RBCK1 2
- RBP4 2
- RFT1 0
- RMND1 0
- RNASEH1 0
- RPIA 2
- RPL10 1
- RRM2B 1
- SACS 0
- SAMHD1 0
- SAR1B 2
- SARS2 0
- SC5D 2
- SCO1 0
- SCO2 0
- SCP2 0
- SDHA 1
- SDHAF1 0
- SDHB 1
- SDHD 0
- SEC23B 1
- SERAC1 0
- SETX 2
- SGSH 0
- SI 2
- SKIV2L 2
- SLC12A3 2
- SLC16A1 1
- SLC17A5 1
- SLC18A2 2
- SLC19A2 0
- SLC19A3 0
- SLC22A5 2
- SLC25A1 1
- SLC25A12 2
- SLC25A13 0
- SLC25A15 0
- SLC25A19 0
- SLC25A20 0
- SLC25A22 0
- SLC25A26 0
- SLC25A3 1
- SLC25A38 0
- SLC25A4 1
- SLC25A46 0
- SLC2A1 2
- SLC2A2 0
- SLC30A10 1
- SLC35A1 2
- SLC35A2 3
- SLC35C1 0
- SLC35D1 0
- SLC37A4 1
- SLC39A14 1
- SLC39A4 2
- SLC39A8 1
- SLC3A1 2
- SLC40A1 1
- SLC46A1 0
- SLC52A2 2
- SLC52A3 1
- SLC5A1 2
- SLC6A19 3
- SLC6A3 2
- SLC6A8 2
- SLC7A7 0
- SLC7A9 2
- SMPD1 1
- SPG7 1
- SPR 2
- SPTLC1 2
- SPTLC2 2
- SRD5A3 0
- SSR4 0
- ST3GAL3 2
- ST3GAL5 0
- STS 2
- SUCLA2 1
- SUCLG1 0
- SUMF1 1
- SUOX 1
- SURF1 0
- TACO1 0
- TALDO1 1
- TANGO2 1
- TAT 2
- TAZ 1
- TCN2 2
- TFR2 1
- TIMM8A 0
- TK2 1
- TMEM165 0
- TMEM5 1
- TMEM70 0
- TPK1 0
- TPP1 1
- TRAP1 1
- TREX1 2
- TRIM37 0
- TRMU 0
- TRNT1 0
- TRPM6 1
- TSFM 1
- TTC19 0
- TTC37 2
- TTPA 2
- TUFM 2
- TUSC3 0
- TWNK 2
- TYMP 1
- UGT1A1 3
- UMOD 2
- UMPS 1
- UQCRB 3
- UROD 1
- UROS 2
- VARS2 0
- VIPAS39 2
- VKORC1 2
- VPS33B 2
- WDR45 1
- WFS1 3
- XDH 1
- XYLT1 1
- XYLT2 0
- YARS2 0
- ALG13 1
- COX4I2 1
- CSTB 1
- DHDDS 1
- GLS 3
- HSPA9 1
- LIPC 2
- MRPS16 2
- NDUFB9 2
- OPLAH 2
- PDK3 2
- PSPH 1
- RANBP2 2
- RNASET2 1
- RYR1 1
- SDHAF2 2
- SDHC 2
- STAT2 1
- TH 2
- UQCRQ 1
- UROC1 1
- ABCG2 1
- ALG2 1
- AMPD1 2
- AOX1 1
- ARSG 1
- ATXN7 2
- BCAT1 1
- BCAT2 2
- C1GALT1C1 1
- CD320 1
- CETP 1
- CLPS 1
- CNDP1 1
- COA5 1
- COX8A 1
- CYP7A1 1
- DHFR2 1
- DLST 2
- DMGDH 1
- DPEP1 1
- EGF 1
- FOLR2 1
- FOLR3 1
- FXYD2 1
- GALNT12 1
- GCSH 2
- GGT1 2
- HAL 1
- HYKK 1
- KHK 1
- LFNG 1
- LIPI 1
- MRPL12 1
- MTHFD1 1
- NAT8L 1
- NDUFA9 1
- NT5C 1
- NUP62 1
- PDK1 2
- PDK2 1
- PDK4 1
- PDP2 1
- PDPR 3
- PDXK 1
- PEX11A 1
- PHKG1 1
- PHYKPL 1
- PNLIP 1
- PPM1B 1
- PPM1K 1
- PREPL 2
- PTPRZ1 1
- RNASEH2A 2
- RNASEH2B 2
- RNASEH2C 2
- SARDH 1
- SCARB1 1
- SHPK 1
- SLC22A4 1
- SLC25A2 1
- SLC27A5 1
- SLC36A2 2
- SLC52A1 1
- SLC6A20 1
- SLCO1B1 1
- SLCO1B3 1
- SUCLG2 1
- SUGCT 1
- TCN1 2
- TDO2 1
- TM6SF2 1
- TMEM126A 2
- TPMT 1
- TREH 1
- UPB1 2
- USF1 1
- HIBADH 1
Undiagnosed metabolic disorders
Gene: TM6SF2 Red List (low evidence)
TM6SF2 (transmembrane 6 superfamily member 2)
EnsemblGeneIds (GRCh38): ENSG00000213996
EnsemblGeneIds (GRCh37): ENSG00000213996
OMIM: 606563, Gene2Phenotype
TM6SF2 is in 2 panels
EnsemblGeneIds (GRCh38): ENSG00000213996
EnsemblGeneIds (GRCh37): ENSG00000213996
OMIM: 606563, Gene2Phenotype
TM6SF2 is in 2 panels
1 review
Sarah Leigh (Genomics England Curator)
Red List (low evidence)
Hepatic lipid synthesis from PUFAs is impaired and could contribute to deficiency in PCs and increased intrahepatic TG in TM6SF2 p.E167K variant carriers.Created: 2 May 2017, 2:44 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
non-alcoholic fatty liver disease
Publications
Created: 2 May 2017, 2:44 p.m.
Panel version: 1.42
Panel version: 1.42
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Literature
- Phenotypes
-
- non-alcoholic fatty liver disease
- OMIM
- 606563
- Clinvar variants
- Variants in TM6SF2
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
2 May 2017, Gel status: 0
Added New Source
Sarah Leigh (Genomics England Curator)TM6SF2 was added to Undiagnosed metabolic disorderspanel. Sources: Literature
2 May 2017, Gel status: 0
Created
Sarah Leigh (Genomics England Curator)TM6SF2 was created by sleigh