Limb disorders
Gene: TCTEX1D2EnsemblGeneIds (GRCh38): ENSG00000213123
EnsemblGeneIds (GRCh37): ENSG00000213123
OMIM: 617353, Gene2Phenotype
TCTEX1D2 is in 8 panels
4 reviews
Catherine Snow (Genomics England)
Added new-gene-name tag, new approved HGNC gene symbol for TCTEX1D2 is DYNLT2BCreated: 23 Feb 2021, 5:53 p.m. | Last Modified: 23 Feb 2021, 5:53 p.m.
Panel Version: 2.36
Arina Puzriakova (Genomics England Curator)
Removed 'watchlist' tag as this gene has now been removed from this panelCreated: 28 Jan 2021, 3:32 p.m. | Last Modified: 28 Jan 2021, 3:32 p.m.
Panel Version: 2.32
Eleanor Williams (Genomics England Curator)
Comment on list classification: Gene made grey as it is green on the Rare multisystem ciliopathy disorders panel (v1.78) and the ciliopathy panel will be applied if a patient is suspected of having a ciliopathy, or the possibility of a ciliopathy cannot be excluded.Created: 2 Dec 2018, 11:10 p.m.
Rebecca Foulger (Genomics England curator)
Added 'watchlist' tag.Created: 11 Oct 2018, 10:44 a.m.
Comment on list classification: Updated rating from Red to Amber: Two cases (PMID:26044572) presenting with polydactyly and/or brachydactyly as part of Short-rib thoracic dysplasia. A further case in the same paper removes part of the TM4SF19 gene in addition to part of the TCTEX1D2 gene. Therefore require further evidence of TCTEX1D2 variants causing limb phenotype before rating Green.Created: 11 Oct 2018, 10:43 a.m.
In a third family (UCL4) reported by Schmidts et al. (2015, PMID:26044572), 3 affected sibs were homozygous for a more than 10-kb deletion removing the start codon and exons 1 and 2 of the TCTEX1D2 gene (and exons 2-5 of the neighbouring TM4SF19 gene). The deletion was also detected in 2 apparently unaffected sibs, indicating reduced penetrance. Some members of this family showed mild brachydactyly.Created: 11 Oct 2018, 10:42 a.m.
In affected children from a Turkish family (UCL82) and a French family (INS) with short-rib thoracic dysplasia (MIM:617405), Schmidts et al. (2015, PMID:26044572) identified homozygosity or compound heterozygosity for loss-of-function variants in TCTEX1D2. The Turkish patient had polydactyly of the hand and foot. The French patient didn't show polydactyly but had brachydactyly.Created: 11 Oct 2018, 10:42 a.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Removed
- Victorian Clinical Genetics Services
- Phenotypes
-
- Short-rib thoracic dysplasia 17 with or without polydactyly, OMIM:617405
- Short-rib thoracic dysplasia 17 with or without polydactyly, MONDO:0054565
- Polydactyly
- Brachydactyly
- Tags
- OMIM
- 617353
- Clinvar variants
- Variants in TCTEX1D2
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Added Tag
Arina Puzriakova (Genomics England Curator)Tag curated_removed tag was added to gene: TCTEX1D2.
Added Tag
Catherine Snow (Genomics England)Tag new-gene-name tag was added to gene: TCTEX1D2.
Set Phenotypes
Arina Puzriakova (Genomics England Curator)Phenotypes for gene: TCTEX1D2 were changed from Polydactyly; Short-rib thoracic dysplasia 17 with or without polydactyly, 617405; Brachydactyly to Short-rib thoracic dysplasia 17 with or without polydactyly, OMIM:617405; Short-rib thoracic dysplasia 17 with or without polydactyly, MONDO:0054565; Polydactyly; Brachydactyly
Removed Tag
Arina Puzriakova (Genomics England Curator)Tag watchlist was removed from gene: TCTEX1D2.
Panel promoted to version 1.0
Eleanor Williams (Genomics England Curator)Rebecca Foulger: In affected children from a Tu
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: tctex1d2 has been removed from the panel.
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source Expert Review Removed was added to TCTEX1D2. Rating Changed from Amber List (moderate evidence) to No List (delete)
Set mode of inheritance
Rebecca Foulger (Genomics England curator)Mode of inheritance for gene: TCTEX1D2 was changed from to BIALLELIC, autosomal or pseudoautosomal
Entity classified by Genomics England curator
Rebecca Foulger (Genomics England curator)Gene: tctex1d2 has been classified as Amber List (Moderate Evidence).
Added Tag
Rebecca Foulger (Genomics England curator)Tag watchlist tag was added to gene: TCTEX1D2.
Entity classified by Genomics England curator
Rebecca Foulger (Genomics England curator)Gene: tctex1d2 has been classified as Amber List (Moderate Evidence).
Set publications
Rebecca Foulger (Genomics England curator)Publications for gene: TCTEX1D2 were set to
Set Phenotypes
Rebecca Foulger (Genomics England curator)Phenotypes for gene: TCTEX1D2 were changed from Polydactyly to Polydactyly; Short-rib thoracic dysplasia 17 with or without polydactyly, 617405; Brachydactyly
Added New Source
Ellen McDonagh (Genomics England Curator)TCTEX1D2 was added to Limb disorders panel. Sources: Victorian Clinical Genetics Services
Created
Ellen McDonagh (Genomics England Curator)TCTEX1D2 was created by Ellen McDonagh