Neonatal cholestasis
Gene: UGT1A1EnsemblGeneIds (GRCh38): ENSG00000241635
EnsemblGeneIds (GRCh37): ENSG00000241635
OMIM: 191740, Gene2Phenotype
UGT1A1 is in 9 panels
2 reviews
Eleanor Williams (Genomics England Curator)
Comment when marking as ready: Sufficient cases reported associated with Crigler-Najjar syndrome type ICreated: 25 Jul 2018, 3:04 p.m.
Comment on mode of inheritance: Monoallelic inheritance is seen in the less severe Gilberts syndrome which is usually recognized in adolescence, but cases of the more severe Crigler-Najjar syndrome, type I affecting neonates follows a biallelic pattern of inheritance.Created: 25 Jul 2018, 3:02 p.m.
Comment on list classification: 50 variants from several publications reported for Crigler-Najjar syndromes.Created: 25 Jul 2018, 2:59 p.m.
Comment on phenotypes: Added phenotypes from Jane Hartley and OMIMCreated: 25 Jul 2018, 2:52 p.m.
Comment on publications: Added publication from OMIM describing variants found.Created: 25 Jul 2018, 2:51 p.m.
In OMIM this gene is associated with Crigler-Najjar syndrome, type I, Crigler-Najjar syndrome, type II, Hyperbilirubinemia, familial transient neonatal and also with [Bilirubin, serum level of, QTL1] and [Gilbert syndrome]. In Crigler-Najjar syndrome, type I, jaundice is apparent at birth or in infancy and so is a relevant neonatal liver dysfunction which is covered by this panel. OMIM report that Kadakol et al. (2000)(PMID: 11013440) lists 50 genetic lesions causing Crigler-Najjar syndromes. They report that Gilbert syndrome is associated with structurally normal UGT1A1 encoding region, but a variant type of promoter upstream to the coding sequences. Genetic lesions in both CN-1 and CN-2 patients may be located in any of the five exons of the UGT1A1 gene. Mutations are homozygous or compound heterozygous. Confirmed association with CRIGLER-NAJJAR SYNDROME, TYPE I in Gene2Phenotype.Created: 25 Jul 2018, 2:49 p.m.
Jane Hartley (Birmingham Women and Children's Hospital)
Mode of inheritance
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Phenotypes
Gilberts syndrome; Crigler Najjar syndrome 1 and 2; unconjugated jaundice
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Victorian Clinical Genetics Services
- Emory Genetics Laboratory
- Phenotypes
-
- Neonatal and Adult Cholestasis
- Crigler-Najjar syndrome, type I 218800
- Crigler-Najjar syndrome, type II 606785
- [Gilbert syndrome] 143500
- unconjugated jaundice
- OMIM
- 191740
- Clinvar variants
- Variants in UGT1A1
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Panel promoted to version 1.0
Sarah Leigh (Genomics England Curator)This panel has been subjected to extensive internal and external review.
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: ugt1a1 has been classified as Green List (High Evidence).
Set mode of inheritance
Eleanor Williams (Genomics England Curator)Mode of inheritance for gene: UGT1A1 was changed from to BIALLELIC, autosomal or pseudoautosomal
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: ugt1a1 has been classified as Green List (High Evidence).
Set Phenotypes
Eleanor Williams (Genomics England Curator)Phenotypes for gene: UGT1A1 were set to Neonatal and Adult Cholestasis; Crigler-Najjar syndrome, type I 218800; Crigler-Najjar syndrome, type II 606785; [Gilbert syndrome] 143500; unconjugated jaundice
Set publications
Eleanor Williams (Genomics England Curator)Publications for gene: UGT1A1 were set to 11013440
Added New Source
Ellen McDonagh (Genomics England Curator)Victorian Clinical Genetics Services was added to UGT1A1. Panel: Cholestasis
Added New Source
Ellen McDonagh (Genomics England Curator)UGT1A1 was added to Cholestasis panel. Sources: Emory Genetics Laboratory
Created
Ellen McDonagh (Genomics England Curator)UGT1A1 was created by Ellen McDonagh