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White matter disorders and cerebral calcification - narrow panel

Gene: DEGS1

Green List (high evidence)

DEGS1 (delta 4-desaturase, sphingolipid 1)
EnsemblGeneIds (GRCh38): ENSG00000143753
EnsemblGeneIds (GRCh37): ENSG00000143753
OMIM: 615843, Gene2Phenotype
DEGS1 is in 6 panels

3 reviews

Sarah Leigh (Genomics England Curator)

Green List (high evidence)

The rating of this gene has been updated to Green following NHS Genomic Medicine Service approval.
Created: 30 Jan 2023, 4:26 p.m. | Last Modified: 30 Jan 2023, 4:26 p.m.
Panel Version: 2.9

Eleanor Williams (Genomics England Curator)

Green List (high evidence)

Comment on list classification: Promoting from grey to amber, but with a recommendation for green rating at the next GMS review. >3 cases reported with a plausible disease causing variant in DEGS1. Presentation is in young children.
Created: 27 Apr 2021, 7:30 p.m. | Last Modified: 27 Apr 2021, 7:30 p.m.
Panel Version: 1.50
Associated with Leukodystrophy, hypomyelinating, 18 #618404 (AR) in OMIM.

PMID: 30620338 - Karsai et al 2019 - identified a missense variant in DEGS1 in a patient with a sphingolipid disorder with leukodystrophy and hypomyelination of the peripheral nervous system. The consanguineous parents were of Turkish origin. Motor developmental delay was first noted at 6 months.

PMID: 30620337 - Pant et al 2019 - report 19 individuals with hypomyelinating leukodystrophies from 13 unrelated families and homozygous or compound heterozygous variants identified in DEGS1 gene. The average age of onset was 5.6 months.

PMID: 31186544 - Dolgin et al 2019 - report a large inbred consanguineous Arab Israeli family in which 4 individuals presented with a complex neurological disorder with mild to severe intellectual disability, spastic quadriplegia, scoliosis and epilepsy. Brain MRI findings were suggestive of leukodystrophy. WES identified a missense variant in DEGS1 that segregated with the disorder. All presented with initial symptoms in early childhood (<2 years old).
Created: 27 Apr 2021, 7:28 p.m. | Last Modified: 27 Apr 2021, 7:28 p.m.
Panel Version: 1.47

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Leukodystrophy, hypomyelinating, 18, OMIM:618404

Publications

Zornitza Stark (Australian Genomics)

Green List (high evidence)

20 individuals from 14 unrelated families. Hypomyelinating leukodystorphy is the prominent feature of this condition.
Sources: Expert list
Created: 15 Sep 2020, 10:10 a.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Leukodystrophy, hypomyelinating, 18, MIM#618404

Publications

Variants in this GENE are reported as part of current diagnostic practice

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Leukodystrophy, hypomyelinating, 18, OMIM:618404
OMIM
615843
Clinvar variants
Variants in DEGS1
Penetrance
None
Publications
Panels with this gene

History Filter Activity

30 Jan 2023, Gel status: 3

Removed Tag

Sarah Leigh (Genomics England Curator)

Tag Q2_21_rating was removed from gene: DEGS1.

30 Jan 2023, Gel status: 3

Added New Source, Added New Source, Status Update

Sarah Leigh (Genomics England Curator)

Source NHS GMS was added to DEGS1. Source Expert Review Green was added to DEGS1. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

27 Apr 2021, Gel status: 2

Entity classified by Genomics England curator

Eleanor Williams (Genomics England Curator)

Gene: degs1 has been classified as Amber List (Moderate Evidence).

27 Apr 2021, Gel status: 0

Added Tag

Eleanor Williams (Genomics England Curator)

Tag Q2_21_rating tag was added to gene: DEGS1.

27 Apr 2021, Gel status: 0

Set Phenotypes

Eleanor Williams (Genomics England Curator)

Phenotypes for gene: DEGS1 were changed from Leukodystrophy, hypomyelinating, 18, MIM#618404 to Leukodystrophy, hypomyelinating, 18, OMIM:618404

27 Apr 2021, Gel status: 0

Set publications

Eleanor Williams (Genomics England Curator)

Publications for gene: DEGS1 were set to 30620338; 30620337

15 Sep 2020, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Zornitza Stark (Australian Genomics)

gene: DEGS1 was added gene: DEGS1 was added to White matter disorders and cerebral calcification - narrow panel. Sources: Expert list Mode of inheritance for gene: DEGS1 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: DEGS1 were set to 30620338; 30620337 Phenotypes for gene: DEGS1 were set to Leukodystrophy, hypomyelinating, 18, MIM#618404 Review for gene: DEGS1 was set to GREEN gene: DEGS1 was marked as current diagnostic