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White matter disorders and cerebral calcification - narrow panel

Gene: NAA60

Green List (high evidence)

NAA60 (N(alpha)-acetyltransferase 60, NatF catalytic subunit)
EnsemblGeneIds (GRCh38): ENSG00000122390
EnsemblGeneIds (GRCh37): ENSG00000122390
OMIM: 614246, Gene2Phenotype
NAA60 is in 4 panels

2 reviews

Eleanor Williams (Genomics England Curator)

Green List (high evidence)

The rating of this gene has been updated to green following NHS Genomic Medicine Service approval.
Created: 26 Sep 2024, 2:49 p.m. | Last Modified: 26 Sep 2024, 2:49 p.m.
Panel Version: 5.3

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Sarah Leigh (Genomics England Curator)

Green List (high evidence)

Comment on list classification: There is enough evidence for this gene to be rated GREEN at the next major review.
Created: 11 Apr 2024, 3:46 p.m. | Last Modified: 11 Apr 2024, 3:46 p.m.
Panel Version: 3.34
To date, NAA60 variants are not associated with a phenotype in OMIM, Gen2Phen or MONDO. PMID: 38480682 reports six NAA60 variants in six unrelated cases with an autosomal recessive primary familial brain calcification (PFBC). Table 2 in PMID: 38480682 outlines the extent of the calcification seen in the patient's CT scans. Functional studies show that the phosphate importer SLC20A2 is a substrate of NAA60 in vitro, and loss of function by the NAA60 variants results in a reduced level of surface SLC20A2, thereby, reducing the extracellular phosphate uptake. The authors conclude, that this study provides a possible biochemical explanation of the involvement of NAA60 variants in PFBC development (PMID: 38480682).
Sources: Literature
Created: 11 Apr 2024, 3:44 p.m. | Last Modified: 15 Apr 2024, 9:50 a.m.
Panel Version: 3.35

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
NAA60 associated autosomal recessive primary familial brain calcifications

Publications

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • Literature
Phenotypes
  • Basal ganglia calcification, idiopathic, 9, autosomal recessive, OMIM:620786
  • basal ganglia calcification, idiopathic, 9, autosomal recessive, MONDO:0968977
OMIM
614246
Clinvar variants
Variants in NAA60
Penetrance
None
Publications
Panels with this gene

History Filter Activity

26 Sep 2024, Gel status: 3

Removed Tag, Removed Tag

Sarah Leigh (Genomics England Curator)

Tag Q2_24_promote_green was removed from gene: NAA60. Tag Q2_24_NHS_review was removed from gene: NAA60.

26 Sep 2024, Gel status: 3

Added New Source, Added New Source, Status Update

Sarah Leigh (Genomics England Curator)

Source NHS GMS was added to NAA60. Source Expert Review Green was added to NAA60. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

2 Jul 2024, Gel status: 2

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for gene: NAA60 were changed from NAA60 associated autosomal recessive primary familial brain calcifications to Basal ganglia calcification, idiopathic, 9, autosomal recessive, OMIM:620786; basal ganglia calcification, idiopathic, 9, autosomal recessive, MONDO:0968977

2 Jul 2024, Gel status: 2

Removed Tag

Sarah Leigh (Genomics England Curator)

Tag Q2_24_MOI was removed from gene: NAA60.

15 Apr 2024, Gel status: 2

Added Tag

Sarah Leigh (Genomics England Curator)

Tag Q2_24_MOI tag was added to gene: NAA60.

15 Apr 2024, Gel status: 2

Set mode of inheritance

Sarah Leigh (Genomics England Curator)

Mode of inheritance for gene: NAA60 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to BIALLELIC, autosomal or pseudoautosomal

11 Apr 2024, Gel status: 2

Entity classified by Genomics England curator

Sarah Leigh (Genomics England Curator)

Gene: naa60 has been classified as Amber List (Moderate Evidence).

11 Apr 2024, Gel status: 1

Created, Added New Source, Added Tag, Set mode of inheritance, Set publications, Set Phenotypes

Sarah Leigh (Genomics England Curator)

gene: NAA60 was added gene: NAA60 was added to White matter disorders and cerebral calcification - narrow panel. Sources: Literature Q2_24_promote_green, Q2_24_NHS_review tags were added to gene: NAA60. Mode of inheritance for gene: NAA60 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown Publications for gene: NAA60 were set to 38480682 Phenotypes for gene: NAA60 were set to NAA60 associated autosomal recessive primary familial brain calcifications Review for gene: NAA60 was set to GREEN