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White matter disorders and cerebral calcification - narrow panel

Gene: SNORD118

Green List (high evidence)

SNORD118 (small nucleolar RNA, C/D box 118)
EnsemblGeneIds (GRCh38): ENSG00000200463
EnsemblGeneIds (GRCh37): ENSG00000200463
OMIM: 616663, Gene2Phenotype
SNORD118 is in 9 panels

4 reviews

Sarah Leigh (Genomics England Curator)

Green List (high evidence)

The rating of this gene has been updated to Green following NHS Genomic Medicine Service approval.
Created: 30 Jan 2023, 4:26 p.m. | Last Modified: 30 Jan 2023, 4:26 p.m.
Panel Version: 2.9
Comment on list classification: There is enough evidence for this gene to be rated GREEN at the next major review.
Created: 23 May 2022, 10:37 a.m. | Last Modified: 23 May 2022, 10:37 a.m.
Panel Version: 1.238

Jenny Simmonds (Leeds Teaching Hospitals Trust)

Green List (high evidence)

Green in adult white matter disorders, but presentation can be in childhood and we would like this gene to be included in the R109 panel, noting that there is already a comment to have the gene upgraded to green at the next review. Note also that the current pipeline of WGS analysis does not tier variants in this gene as it is non-coding.
Created: 3 Mar 2022, 10:53 a.m. | Last Modified: 3 Mar 2022, 10:53 a.m.
Panel Version: 1.220

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Leukoencephalopathy, brain calcifications, and cysts

Publications

Ivone Leong (Genomics England Curator)

Comment on list classification: Promoted from Red to Amber. This gene is associated with a relevant phenotype in OMIM and Gene2Phenotype. This gene is also Green on the Inherited white matter disorders (Version 1.121) and White matter disorders - adult onset (Version 1.15) panels. This gene should be rated Green at the next review.
Created: 11 Jun 2021, 1:24 p.m. | Last Modified: 11 Jun 2021, 1:24 p.m.
Panel Version: 1.175

Zornitza Stark (Australian Genomics)

Green List (high evidence)

Over 30 families reported, age at presentation ranged between infancy and 54 years.
Created: 16 Sep 2020, 4:30 a.m. | Last Modified: 16 Sep 2020, 4:30 a.m.
Panel Version: 1.14

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Leukoencephalopathy, brain calcifications, and cysts 614561

Publications

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Leukoencephalopathy, brain calcifications, and cysts, OMIM:614561
Tags
locus-type-small-nucleolar
OMIM
616663
Clinvar variants
Variants in SNORD118
Penetrance
None
Publications
Mode of Pathogenicity
Other - please provide details in the comments
Panels with this gene

History Filter Activity

30 Jan 2023, Gel status: 3

Removed Tag, Removed Tag, Removed Tag

Sarah Leigh (Genomics England Curator)

Tag Q2_21_rating was removed from gene: SNORD118. Tag Q2_22_rating was removed from gene: SNORD118. Tag Q2_22_NHS_review was removed from gene: SNORD118.

30 Jan 2023, Gel status: 3

Added New Source, Added New Source, Status Update

Sarah Leigh (Genomics England Curator)

Source NHS GMS was added to SNORD118. Source Expert Review Green was added to SNORD118. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

23 May 2022, Gel status: 2

Entity classified by Genomics England curator

Sarah Leigh (Genomics England Curator)

Gene: snord118 has been classified as Amber List (Moderate Evidence).

23 May 2022, Gel status: 2

Added Tag

Sarah Leigh (Genomics England Curator)

Tag Q2_22_rating tag was added to gene: SNORD118.

23 May 2022, Gel status: 2

Added Tag

Sarah Leigh (Genomics England Curator)

Tag locus-type-small-nucleolar tag was added to gene: SNORD118.

23 May 2022, Gel status: 2

Set publications

Sarah Leigh (Genomics England Curator)

Publications for gene: SNORD118 were set to 28177126; 27571260

23 May 2022, Gel status: 2

Added Tag

Sarah Leigh (Genomics England Curator)

Tag Q2_22_NHS_review tag was added to gene: SNORD118.

11 Jun 2021, Gel status: 2

Entity classified by Genomics England curator

Ivone Leong (Genomics England Curator)

Gene: snord118 has been classified as Amber List (Moderate Evidence).

11 Jun 2021, Gel status: 1

Added Tag

Ivone Leong (Genomics England Curator)

Tag Q2_21_rating tag was added to gene: SNORD118.

11 Jun 2021, Gel status: 1

Set Phenotypes

Ivone Leong (Genomics England Curator)

Phenotypes for gene: SNORD118 were changed from 614561 to Leukoencephalopathy, brain calcifications, and cysts, OMIM:614561

8 Jan 2019, Gel status: 1

Panel promoted to version 1.0

Louise Daugherty (Genomics England Curator)

Checked against super panel made up of the panel constituents. Ready to promote to version 1

19 Dec 2018, Gel status: 1

Set Phenotypes

Ellen McDonagh (Genomics England Curator)

Added phenotypes 614561 for gene: SNORD118

19 Dec 2018, Gel status: 1

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set mode of pathogenicity

Ellen McDonagh (Genomics England Curator)

gene: SNORD118 was added gene: SNORD118 was added to White matter disorders and cerebral calcification - narrow panel. Sources: Expert Review Red Mode of inheritance for gene: SNORD118 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: SNORD118 were set to 28177126; 27571260 Phenotypes for gene: SNORD118 were set to 614561 Mode of pathogenicity for gene: SNORD118 was set to Other - please provide details in the comments