Paediatric disorders - additional genes

Gene: CACHD1

Amber List (moderate evidence)

CACHD1 (cache domain containing 1)
EnsemblGeneIds (GRCh38): ENSG00000158966
EnsemblGeneIds (GRCh37): ENSG00000158966
CACHD1 is in 2 panels

1 review

Achchuthan Shanmugasundram (Genomics England Curator)

Green List (high evidence)

Comment on list classification: There is sufficient evidence available (three unrelated cases and functional studies) for the promotion of this gene to green rating on the next GMS update.
Created: 7 Jan 2025, 10:23 p.m. | Last Modified: 7 Jan 2025, 10:23 p.m.
Panel Version: 6.6
PMID:38158856 reported six affected individuals from four unrelated families with biallelic (either homozygous or compound heterozygous) CACHD1 variants (3 splice, 2 frameshift and 1 nonsense variant).

Excluding the two fetal cases from the fourth family, all others were affected by syndromic neurodevelopmental abnormalities, multiple organ systems featuring global impairment of psychomotor development, dysmorphic facial features, genitourinary abnormalities, oculo-auricular and congenital malformation. Cognitive impairment was reported to be mild in three cases from three different families, while the fourth case had no cognitive impairment. Psychomotor delay was reported in two unrelated cases and seizure was reported in one.

Functional evidence from human stem cell-derived neural models and zebrafish mutants are also available in support of the disease association.

This gene has not yet been associated with relevant phenotypes either in OMIM or in Gene2Phenotype.
Sources: Literature
Created: 7 Jan 2025, 10:21 p.m. | Last Modified: 18 Jul 2025, 1:52 p.m.
Panel Version: 7.1

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
syndromic complex neurodevelopmental disorder, MONDO:0800439

Publications

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • syndromic complex neurodevelopmental disorder, MONDO:0800439
Tags
dd_review Q1_25_ promote_green
Clinvar variants
Variants in CACHD1
Penetrance
None
Publications
Panels with this gene

History Filter Activity

9 Jan 2025, Gel status: 2

Added Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag dd_review tag was added to gene: CACHD1.

7 Jan 2025, Gel status: 2

Entity classified by Genomics England curator

Achchuthan Shanmugasundram (Genomics England Curator)

Gene: cachd1 has been classified as Amber List (Moderate Evidence).

7 Jan 2025, Gel status: 1

Created, Added New Source, Added Tag, Set mode of inheritance, Set publications, Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

gene: CACHD1 was added gene: CACHD1 was added to Paediatric disorders - additional genes. Sources: Literature Q1_25_ promote_green tags were added to gene: CACHD1. Mode of inheritance for gene: CACHD1 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: CACHD1 were set to 38158856 Phenotypes for gene: CACHD1 were set to syndromic complex neurodevelopmental disorder, MONDO:0800439 Review for gene: CACHD1 was set to GREEN