Paediatric disorders - additional genes

Gene: PRDM6

Amber List (moderate evidence)

PRDM6 (PR/SET domain 6)
EnsemblGeneIds (GRCh38): ENSG00000061455
EnsemblGeneIds (GRCh37): ENSG00000061455
OMIM: 616982, Gene2Phenotype
PRDM6 is in 2 panels

2 reviews

Ida Ertmanska (Genomics England Curator)

Green List (high evidence)

Comment on phenotypes: OMIM phenotype updated 12 May 2026.
Created: 12 May 2026, 3:22 p.m. | Last Modified: 12 May 2026, 3:22 p.m.
Panel Version: 8.5
Comment on list classification: There are now 3 unrelated families with heterozygous PRDM6 variants and isolated patent ductus arteriosus. Hence, this gene should be promoted to Green at the next update.
Created: 12 May 2026, 3:18 p.m. | Last Modified: 12 May 2026, 3:18 p.m.
Panel Version: 8.3
PMID: 38071433 Stanley et al., 2023
6 patients from 2 unrelated families with non-syndromic Patent ductus arteriosus and heterozygous PRDM6 variants: c.1646G>A and c.1645C>T - both segregated with PDA in a dominant manner.

PMID: 27181681 Li et al., 2016
Report of a large African-American family with dominant isolated PDA, first reported in 1965. 9 individuals affected, het for c.1646G>A, p.Arg549Gln.

This gene is associated with AD Patent ductus arteriosus 3 617039 in OMIM (accessed 12th May 2026).
Created: 12 May 2026, 3:17 p.m. | Last Modified: 12 May 2026, 3:17 p.m.
Panel Version: 8.2

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
Patent ductus arteriosus 3, OMIM:617039; patent ductus arteriosus 3, MONDO:0024266

Publications

Ellen McDonagh (Genomics England Curator)

Red List (low evidence)

This gene was submitted by Rebecca Whittington on behalf of the South West GLH, for inclusion on the Paediatric disorders panel (https://panelapp.genomicsengland.co.uk/panels/486/)
Created: 26 Nov 2019, 2:38 p.m. | Last Modified: 26 Nov 2019, 2:38 p.m.
Panel Version: 0.35

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown

Phenotypes
Patent ductus arteriosus 3

Details

Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • South West GLH
Phenotypes
  • Patent ductus arteriosus 3, OMIM:617039
  • patent ductus arteriosus 3, MONDO:0024266
Tags
Q2_26_promote_green
OMIM
616982
Clinvar variants
Variants in PRDM6
Penetrance
None
Publications
Panels with this gene

History Filter Activity

12 May 2026, Gel status: 2

Set publications

Ida Ertmanska (Genomics England Curator)

Publications for gene: PRDM6 were set to

12 May 2026, Gel status: 2

Set Phenotypes

Ida Ertmanska (Genomics England Curator)

Phenotypes for gene: PRDM6 were changed from Patent ductus arteriosus 3 to Patent ductus arteriosus 3, OMIM:617039; patent ductus arteriosus 3, MONDO:0024266

12 May 2026, Gel status: 2

Set mode of inheritance

Ida Ertmanska (Genomics England Curator)

Mode of inheritance for gene: PRDM6 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

12 May 2026, Gel status: 2

Entity classified by Genomics England curator

Ida Ertmanska (Genomics England Curator)

Gene: prdm6 has been classified as Amber List (Moderate Evidence).

12 May 2026, Gel status: 1

Added Tag

Ida Ertmanska (Genomics England Curator)

Tag Q2_26_promote_green tag was added to gene: PRDM6.

26 Nov 2019, Gel status: 1

Created, Added New Source, Set mode of inheritance, Set Phenotypes

Ellen McDonagh (Genomics England Curator)

gene: PRDM6 was added gene: PRDM6 was added to Paediatric disorders - additional genes. Sources: South West GLH Mode of inheritance for gene: PRDM6 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown Phenotypes for gene: PRDM6 were set to Patent ductus arteriosus 3