Paediatric disorders - additional genes

Gene: WDHD1

Amber List (moderate evidence)

WDHD1 (WD repeat and HMG-box DNA binding protein 1)
EnsemblGeneIds (GRCh38): ENSG00000198554
EnsemblGeneIds (GRCh37): ENSG00000198554
OMIM: 608126, Gene2Phenotype
WDHD1 is in 3 panels

1 review

Achchuthan Shanmugasundram (Genomics England Curator)

Green List (high evidence)

Comment on list classification: There are 14 unrelated families reported with biallelic WDHD1 variants and presenting with microcephalic primordial dwarfism (MPD) and a broad spectrum of additional abnormalities. Hence, this gene can be promoted to green rating in the next update.
Created: 15 Apr 2026, 10:47 a.m. | Last Modified: 15 Apr 2026, 10:47 a.m.
Panel Version: 7.49
PMID:41962535 (2026) reported the identification of biallelic hypomorphic variants in WDHD1 gene in 17 patients from 14 families with microcephalic primordial dwarfism (MPD) and a broad spectrum of additional abnormalities. All patients had severe IUGR and microcephaly.

The phenotypes in ten patients homozygous for the c.1769−1G>C variant was broad, ranging from foetal lethality to MPD with mild to moderate developmental delay and additional clinical features including severe malformations of multiple organs likely contributing to intrauterine death. The five patients that survived to birth but died as neonates had severe hepatic abnormalities, with acute liver failure (ALF) as the cause of death in four.

Among the seven living subjects, two were homozygous for the c.1769−1G>C variant, while the remaining subjects were compound heterozygous, with combinations of a loss-of-function allele and an intronic or missense variant or two non-coding variants. The most common clinical features among them were postnatal growth retardation, feeding difficulties, developmental delay, a small face with a bulbous nose and retrognathia, a high-pitched voice, and hip dislocation.

There is also functional evidence available from patient-derived fibroblasts which supports the disease association.

This gene has not yet been associated with relevant phenotypes either in OMIM or in Gene2Phenotype (records last accessed 14 April 2026).
Sources: Literature
Created: 15 Apr 2026, 10:45 a.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
microcephalic osteodysplastic primordial dwarfism, MONDO:0000060

Publications

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • microcephalic osteodysplastic primordial dwarfism, MONDO:0000060
Tags
Q2_26_promote_green
OMIM
608126
Clinvar variants
Variants in WDHD1
Penetrance
None
Publications
Panels with this gene

History Filter Activity

15 Apr 2026, Gel status: 2

Entity classified by Genomics England curator

Achchuthan Shanmugasundram (Genomics England Curator)

Gene: wdhd1 has been classified as Amber List (Moderate Evidence).

15 Apr 2026, Gel status: 1

Added Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q2_26_promote_green tag was added to gene: WDHD1.

15 Apr 2026, Gel status: 1

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

gene: WDHD1 was added gene: WDHD1 was added to Paediatric disorders - additional genes. Sources: Literature Mode of inheritance for gene: WDHD1 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: WDHD1 were set to 41962535 Phenotypes for gene: WDHD1 were set to microcephalic osteodysplastic primordial dwarfism, MONDO:0000060 Review for gene: WDHD1 was set to GREEN