Adult onset dystonia, chorea or related movement disorder
Gene: VPS16EnsemblGeneIds (GRCh38): ENSG00000215305
EnsemblGeneIds (GRCh37): ENSG00000215305
OMIM: 608550, Gene2Phenotype
VPS16 is in 4 panels
3 reviews
Sarah Leigh (Genomics England Curator)
The rating of this gene has been updated following NHS Genomic Medicine Serviceapproval.Created: 11 Mar 2022, 1:37 p.m. | Last Modified: 1 Jun 2023, 3:52 p.m.
Panel Version: 3.2
Arina Puzriakova (Genomics England Curator)
Penetrance for gene VPS16 was set from None to Incomplete - some variants transmitted from an unaffected parent and heterozygous LoF variants are observed in presumably healthy individuals in gnomADCreated: 14 Jun 2021, 10:43 a.m. | Last Modified: 14 Jun 2021, 10:43 a.m.
Panel Version: 1.119
Comment on list classification: New gene added by James Polke (North Thames GLH). There is sufficient evidence to promote this gene to Green at the next GMS panel update - at least 19 unrelated families reported with progressive dystonia (both multifocal and generalised types described) in association with variants in this gene (publications updated with relevant literature). Variable age of onset ranging from 3 to 50 years.Created: 11 Jun 2021, 3:14 p.m. | Last Modified: 11 Jun 2021, 3:14 p.m.
Panel Version: 1.116
Comment on mode of inheritance: While most cases of VPS16-related dystonia have been due to heterozygous variants, one Chinese consanguineous family with dystonia has been found to harbour a homozygous missense variant (PMID:27174565). In view of only one biallelic case, MOI has been set as 'Monoallelic' - patients with biallelic variants would still be picked up by the Genomics England pipeline.
Furthermore, biallelic VPS16 variants have been linked to a mucopolysaccharidosis‐like disease - reviewed on the 'Lysosomal storage disorder' (R276) panel.Created: 11 Jun 2021, 3:13 p.m. | Last Modified: 11 Jun 2021, 3:13 p.m.
Panel Version: 1.115
James Polke (North Thames GLH)
18 individuals reported with high-impact variants in VPS16 and a progressive early onset dystonia (median age 12 years, range 3–50 years), with prominent oromandibular, bulbar, cervical, and upper limb involvement. Progressive generalization ensued, although most remained ambulant, and only a minority (16%) lost the ability to walk in adulthood.
Additional clinical features of mild to moderate intellectual disability and neuropsychiatric symptoms were present in approximately one‐third. In 4 individuals, magnetic resonance imaging (MRI) showed bilateral and symmetrical hypointensity of the globi pallidi and sometimes also the midbrain and dentate nuclei, suggestive of iron deposition. Mild generalized cerebral atrophy was also apparent in 4 individuals.
Sources: NHS GMSCreated: 28 May 2021, 12:18 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Dystonia; Dystonia Associated with Lysosomal Abnormalities; Dystonia 30; OMIM #619291
Publications
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
- Sources
-
- Expert Review Green
- Phenotypes
-
- Dystonia 30, OMIM:619291
- Dystonia Associated with Lysosomal Abnormalities
- OMIM
- 608550
- Clinvar variants
- Variants in VPS16
- Penetrance
- Incomplete
- Publications
- Panels with this gene
History Filter Activity
Removed Tag, Removed Tag
Ivone Leong (Genomics England Curator)Tag Q2_21_rating was removed from gene: VPS16. Tag Q2_21_NHS_review was removed from gene: VPS16.
Added New Source, Status Update
Ivone Leong (Genomics England Curator)Source Expert Review Green was added to VPS16. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)
Set penetrance
Arina Puzriakova (Genomics England Curator)Penetrance for gene VPS16 was set from to None
Added Tag
Arina Puzriakova (Genomics England Curator)Tag Q2_21_NHS_review tag was added to gene: VPS16.
Set publications
Arina Puzriakova (Genomics England Curator)Publications for gene: VPS16 were set to 32808683
Set Phenotypes
Arina Puzriakova (Genomics England Curator)Phenotypes for gene: VPS16 were changed from Dystonia; Dystonia Associated with Lysosomal Abnormalities; Dystonia 30; OMIM #619291 to Dystonia 30, OMIM:619291; Dystonia Associated with Lysosomal Abnormalities
Added Tag
Arina Puzriakova (Genomics England Curator)Tag Q2_21_rating tag was added to gene: VPS16.
Entity classified by Genomics England curator
Arina Puzriakova (Genomics England Curator)Gene: vps16 has been classified as Amber List (Moderate Evidence).
Set mode of inheritance
Arina Puzriakova (Genomics England Curator)Mode of inheritance for gene: VPS16 was changed from MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes
James Polke (North Thames GLH)gene: VPS16 was added gene: VPS16 was added to Adult onset movement disorder. Sources: NHS GMS Mode of inheritance for gene: VPS16 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: VPS16 were set to 32808683 Phenotypes for gene: VPS16 were set to Dystonia; Dystonia Associated with Lysosomal Abnormalities; Dystonia 30; OMIM #619291 Review for gene: VPS16 was set to GREEN