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  3. NOTCH2
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Cholestasis

Gene: NOTCH2

Green List (high evidence)
NOTCH2 (notch 2)
EnsemblGeneIds (GRCh38): ENSG00000134250
EnsemblGeneIds (GRCh37): ENSG00000134250
OMIM: 600275, Gene2Phenotype
NOTCH2 is in 14 panels

5 reviews

Ivone Leong (Genomics England Curator)

Green List (high evidence)

Comment when marking as ready: As discussed in the GMS Gastrohepatology Specialist Test Group webex call 14th Jan 2019: The Specialist Test Group agreed that there is enough evidence to rate this gene green.
Created: 31 Jan 2019, 10:38 a.m.
Initial gene list and info collated by Miranda Durkie Sheffield Diagnostic Genetics Service December 2018 on behalf of the GMS Gastrohepatology specialist test group. Gene Symbol submitted: NOTCH2; Suggested intial gene rating: Green; Evidence for inclusion: none given; Evidence for exclusion: none given; Technical notes (e.g. non-coding/CNV mutations requiring coverage?): none given
Created: 7 Jan 2019, 4:42 p.m.
Created: 7 Jan 2019, 4:42 p.m.

Panel version: 0.3

Louise Daugherty (Genomics England Curator)

Comment on mode of inheritance: changed MOI to not imprinted from external clinical reviews
Created: 25 Jul 2018, 2:35 p.m.
Created: 25 Jul 2018, 2:35 p.m.

Panel version: Imported from Neonatal cholestasis panel version 0.168

Anna de Burca (Oxford University Hospitals NHS Foundation Trust)

Comment on list classification: Minor cause of Alagille syndrome - variants found in ~1.5% of cases. >10 unrelated cases reported to date.
Created: 25 Jul 2018, 12:20 p.m.
Created: 25 Jul 2018, 12:20 p.m.

Panel version: Imported from Neonatal cholestasis panel version 0.105

Jane Hartley (Birmingham Women and Children's Hospital)

Green List (high evidence)

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
cholestasis; Alagille syndrome

Variants in this GENE are reported as part of current diagnostic practice

Created: 16 Jun 2018, 5:51 p.m.

Panel version: Imported from Neonatal cholestasis panel version 0.18

Thalia Antoniadi (West Midlands Regional Genetics Laboratory)

Green List (high evidence)

We have not seen any pathogenic variants in our cohort of ~160 patients , but these were not necessarily Alagille referrals.
Created: 4 Jun 2018, 1:22 p.m.

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Variants in this GENE are reported as part of current diagnostic practice

Created: 4 Jun 2018, 1:22 p.m.

Panel version: Imported from Neonatal cholestasis panel version 0.18

Details

Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Other
  • NHS GMS
Phenotypes
  • Alagille syndrome 2
  • Neonatal and Adult Cholestasis
OMIM
600275
Clinvar variants
Variants in NOTCH2
Penetrance
None
Publications
Panels with this gene

History Filter Activity

31 Jan 2019, Gel status: 3

Entity classified by Genomics England curator

Ivone Leong (Genomics England Curator)

Gene: notch2 has been classified as Green List (High Evidence).

14 Jan 2019, Gel status: 4

Added New Source, Set mode of inheritance, Set Phenotypes, Set publications

Ivone Leong (Genomics England Curator)

Source Other was added to NOTCH2. Mode of inheritance for gene NOTCH2 was changed from to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Added phenotypes Alagille syndrome 2; Neonatal and Adult Cholestasis for gene: NOTCH2 Publications for gene NOTCH2 were changed from to 22209762; 16773578

7 Jan 2019, Gel status: 3

Added New Source, Status Update

Ivone Leong (Genomics England Curator)

Source Expert Review Green was added to NOTCH2. Rating Changed from Red List (low evidence) to Green List (high evidence)

7 Jan 2019, Gel status: 1

Created, Added New Source, Set mode of inheritance

Ivone Leong (Genomics England Curator)

gene: NOTCH2 was added gene: NOTCH2 was added to Cholestasis. Sources: NHS GMS Mode of inheritance for gene: NOTCH2 was set to