Renal ciliopathies

Gene: IFT27

Amber List (moderate evidence)

IFT27 (intraflagellar transport 27)
EnsemblGeneIds (GRCh38): ENSG00000100360
EnsemblGeneIds (GRCh37): ENSG00000100360
OMIM: 615870, Gene2Phenotype
IFT27 is in 9 panels

6 reviews

Arina Puzriakova (Genomics England Curator)

Green List (high evidence)

Comment on list classification: With the addition of the recent publication, there are now at least three unrelated cases reported with a renal phenotype, and therefore enough evidence for a rating upgrade from Amber to GREEN at the next major review.
Created: 31 Jul 2020, 8:53 a.m. | Last Modified: 31 Jul 2020, 8:53 a.m.
Panel Version: 1.26
Associated with phenotype in OMIM and a possible gene for Bardet-Biedl syndrome 19 in G2P.

Sanchez-Navarro et al. (2018) (PMID: 29588463) report the two compound heterozygous variants (c.104A>G and c.350-2A>G), in a BBS patient with chronic renal failure, albeit no segregation or functional studies were undertaken.
Created: 31 Jul 2020, 8:52 a.m. | Last Modified: 31 Jul 2020, 8:52 a.m.
Panel Version: 1.25

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Bardet-Biedl syndrome 19, 615996

Publications

Eleanor Williams (Genomics England Curator)

PMID: 30761183 - Schaefer et al 2019 - two compound heterozygous mutations in IFT27 identified by WES in a child presenting with the classical BBS signs. However, NO renal phenotype was found.

As this is not a third case with a renal phenotype this gene should stay amber on this panel.
Created: 24 Jun 2020, 4:38 p.m. | Last Modified: 24 Jun 2020, 4:38 p.m.
Panel Version: 1.17

Zornitza Stark (Australian Genomics)

Green List (high evidence)

Third family reported in 2019, albeit with variants previously reported in other families.
Created: 3 Jan 2020, 4:10 a.m. | Last Modified: 3 Jan 2020, 4:10 a.m.
Panel Version: 1.0

Phenotypes
Bardet-Biedl syndrome 19, MIM# 615996

Publications

Rebecca Foulger (Genomics England curator)

Comment on list classification: Updated rating from Red to Amber based on presence of second paper: PMID:29704304 (2018) with ciliopathy phenotype, and added 'watchlist' tag.
Created: 1 Nov 2018, 2:49 p.m.
Aldahmesh et al. (2014, PMID:24488770) identified a homozygous c.296G-A transition in the IFT27 gene (p.C99Y) in a consanguineous family with two affected children with Bardet-Biedl syndrome-19 (MIM:615996). Additional signs in one sibling included polydactyly.

PMID:29704304 (2018) describe a fetus with an unclassified severe ciliopathy phenotype including short ribs, polydactyly, bilateral renal agenesis, and imperforate anus, with compound heterozygosity for c.118_125del, p.(Thr40Glyfs*11) and a c.352 +1G>T in IFT27.
Created: 1 Nov 2018, 2:48 p.m.

Alice Gardham (Genomics England)

Comment on list classification: Only reported in one family
Created: 23 Jan 2017, 12:02 p.m.

Caroline Wright (Genomics England Curator)

Comment on list classification: One consanguineous family in OMIM
Created: 17 Dec 2015, 2:18 p.m.
Comment on list classification: 1 family in OMIM
Created: 17 Dec 2015, 2:17 p.m.

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert list
  • Radboud University Medical Center, Nijmegen
  • UKGTN
Phenotypes
  • ?Bardet-Biedl syndrome 19, 615996
Tags
for-review
OMIM
615870
Clinvar variants
Variants in IFT27
Penetrance
None
Publications
Panels with this gene

History Filter Activity

31 Jul 2020, Gel status: 2

Added Tag

Arina Puzriakova (Genomics England Curator)

Tag for-review tag was added to gene: IFT27.

31 Jul 2020, Gel status: 2

Entity classified by Genomics England curator

Arina Puzriakova (Genomics England Curator)

Gene: ift27 has been classified as Amber List (Moderate Evidence).

24 Jun 2020, Gel status: 2

Set publications

Eleanor Williams (Genomics England Curator)

Publications for gene: IFT27 were set to

10 Jul 2019, Gel status: 2

Created, Added New Source, Set mode of inheritance, Set Phenotypes

Eleanor Williams (Genomics England Curator)

gene: IFT27 was added gene: IFT27 was added to Renal ciliopathies. Sources: UKGTN,Radboud University Medical Center, Nijmegen,Expert list,Expert Review Amber Mode of inheritance for gene: IFT27 was set to BIALLELIC, autosomal or pseudoautosomal Phenotypes for gene: IFT27 were set to ?Bardet-Biedl syndrome 19, 615996