Paediatric motor neuronopathies
Gene: SLC52A3EnsemblGeneIds (GRCh38): ENSG00000101276
EnsemblGeneIds (GRCh37): ENSG00000101276
OMIM: 613350, Gene2Phenotype
SLC52A3 is in 15 panels
4 reviews
Ida Ertmanska (Genomics England Curator)
A 'treatable' tag was added as high-dose riboflavin supplementation early on is effective in stopping disease progression and possibly lifesaving (https://www.ncbi.nlm.nih.gov/books/NBK299312/)Created: 22 May 2026, 9:16 a.m. | Last Modified: 22 May 2026, 9:16 a.m.
Panel Version: 3.16
Comment on mode of inheritance: There are more than 3 unrelated patients with both monoallelic and biallelic variants in SLC52A3 and Brown-Vialetto-Van Laere syndrome. Both modes of inheritance result in the same phenotype of hearing loss and ponto-bulbar palsy / bilateral vestibular neuropathy. Hence, the mode of inheritance for Paediatric motor neuronopathies should be updated from BIALLELIC, autosomal or pseudoautosomal to BOTH monoallelic and biallelic, autosomal or pseudoautosomal.Created: 22 May 2026, 9:11 a.m. | Last Modified: 22 May 2026, 9:11 a.m.
Panel Version: 3.14
PMID:22718020 (2012) reported three patients with Brown-Vialetto-Van Laere syndrome. Variant in only one allele was identified in SLC52A3 by Sanger sequencing in two of these three patents.
PMID:29053833 (2017) reported 6 patients with monoallelic variants identified by PCR and Sanger sequencing. They showed phenotypes indistinguishable from biallelic cases in severity, age of onset, and clinical features. The authors used array CGH to exclude large deletions/duplications on the second allele. Sensorineural hearing loss was present in 5/6 patients, and the presenting symptom in 3 of the heterozygous cases.
PMID:34384672 (2021) reported three patients with adult-onset Brown-Vialetto-van Laere syndrome and with SLC52A3 variants, of which one patient (Case 3) was identified with a heterozygous variant and progressive hearing loss, bilateral steppage gait and a cranial nerves impairment, diagnosed with bilateral vestibular neuropathy.
PMID:38469093 (2024) reported a 16-year-old female with a phenotype consistent with riboflavin transporter deficiency: sensorineural hearing loss, progressive bulbar and predominantly distal upper and lower extremity weakness. Symptoms started with right eyelid ptosis and sensory changes on the left face. Over the next three months, she developed bilateral hand tremors and distal weakness followed by progressive bifacial weakness, dysarthria, and dysphagia. She was identified with a novel heterozygous variant SLC52A3 p.Tyr324Cys, identified by WGS. Her asymptomatic brother was also identified with the same heterozygous variant - reduced penetrance for the monoallelic state. Her condition improved in response to riboflavin supplementation.
PMID:40539137 (2025) reported a 68-year-old female patient with atypical late-onset Brown-Vialetto-Van Laere syndrome carrying a variant (p.Val413Ala) previously seen only in compound heterozygous patients in heterozygous state.Created: 22 May 2026, 9:10 a.m. | Last Modified: 22 May 2026, 9:10 a.m.
Panel Version: 3.14
Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Phenotypes
Brown-Vialetto-Van Laere syndrome 1, OMIM:211530; Brown-Vialetto-van Laere syndrome 1, MONDO:0024537; ?Fazio-Londe disease, OMIM:211500; riboflavin transporter deficiency, MONDO:0008891
Publications
Pinki Munot (Consultant )
many families reported
well characterised phenotypeCreated: 2 Mar 2017, 4:24 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Brown-Vialetto-Van Laere syndrome; infantile motor neuronopathy; deafness; respiratory insufficiency
Dragana Josifova (Guy's and St. Thomas' NHS Trust)
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Mode of pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- UKGTN
- Radboud University Medical Center, Nijmegen
- Phenotypes
-
- Brown-Vialetto-Van Laere syndrome 1, OMIM:211530
- Brown-Vialetto-van Laere syndrome 1, MONDO:0024537
- ?Fazio-Londe disease, OMIM:211500
- riboflavin transporter deficiency, MONDO:0008891
- Tags
- OMIM
- 613350
- Clinvar variants
- Variants in SLC52A3
- Penetrance
- Complete
- Publications
- Mode of Pathogenicity
- Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
- Panels with this gene
-
- Monogenic hearing loss
- Intellectual disability
- DDG2P
- Undiagnosed metabolic disorders
- Childhood onset dystonia, chorea or related movement disorder
- Mitochondrial disorders
- Fetal anomalies
- Hereditary neuropathy or pain disorder
- Paediatric motor neuronopathies
- Likely inborn error of metabolism
- Adult onset neurodegenerative disorder
- Possible mitochondrial disorder - nuclear genes
- Amyotrophic lateral sclerosis/motor neuron disease
- Hereditary neuropathy
- Arthrogryposis
History Filter Activity
Set Phenotypes
Ida Ertmanska (Genomics England Curator)Phenotypes for gene: SLC52A3 were changed from Brown-Vialetto-Van Laere syndrome 1, OMIM:211530 to Brown-Vialetto-Van Laere syndrome 1, OMIM:211530; Brown-Vialetto-van Laere syndrome 1, MONDO:0024537; ?Fazio-Londe disease, OMIM:211500; riboflavin transporter deficiency, MONDO:0008891
Set publications
Ida Ertmanska (Genomics England Curator)Publications for gene: SLC52A3 were set to 20206331; 20920669
Added Tag
Ida Ertmanska (Genomics England Curator)Tag Q2_26_MOI tag was added to gene: SLC52A3.
Added Tag
Ida Ertmanska (Genomics England Curator)Tag treatable tag was added to gene: SLC52A3.
Set Phenotypes
Ivone Leong (Genomics England Curator)Phenotypes for gene: SLC52A3 were changed from Brown-Vialetto-Van Laere syndrome 1, 211530 to Brown-Vialetto-Van Laere syndrome 1, OMIM:211530
panel promoted to version 1
Arianna Tucci (Genomics England Curator)Gene panel promoted to v1 on 7 March 2017 following external review and internal curation
Set publications
Alice Gardham (Genomics England)Publications for SLC52A3 were set to 20206331; 20920669
Set mode of pathogenicity
Alice Gardham (Genomics England)Mode of pathogenicity for SLC52A3 was changed to Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
Gene classified by Genomics England curator
Alice Gardham (Genomics England)This gene has been classified as Green List (High Evidence).
Gene classified by Genomics England curator
Alice Gardham (Genomics England)This gene has been classified as Green List (High Evidence).
Added New Source
Antonio Rueda (GEL)SLC52A3 was added to Paediatric motor neuronopathiespanel. Sources: UKGTN
Added New Source
Antonio Rueda (GEL)SLC52A3 was added to Paediatric motor neuronopathiespanel. Sources: Radboud University Medical Center, Nijmegen