Clefting
Gene: BMP4EnsemblGeneIds (GRCh38): ENSG00000125378
EnsemblGeneIds (GRCh37): ENSG00000125378
OMIM: 112262, Gene2Phenotype
BMP4 is in 18 panels
3 reviews
Ellen McDonagh (Genomics England Curator)
More than 3 cases reported in PMID 19249007, however, unaffected parents of the proband in several cases also had the variant (supplementary table). It is a confirmed DD gene for OROFACIAL CLEFT 11, however the publication provided is PMID 19249007. Seems to be a risk factor for non-syndromic cleft lip with or without cleft palate.Created: 31 May 2017, 1:52 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
MICROPHTHALMIA, SYNDROMIC 6; MCOPS6, OROFACIAL CLEFT 11; OFC11
Publications
Louise Daugherty (Genomics England Curator)
Comment on list classification: Changed status from Amber to Red- association studies only and from comments from expert reviewer and in-house clinical team.Created: 20 Mar 2017, 10:28 a.m.
The BMP4 gene has been suggested as a candidate gene for non-syndromic CL/CLP and CP because of its role in the regulation of skeletal development including cartilage and bone formation during craniofacial and limb development (PMID:15694398).
Several association studies have been conducted across different populations to identify genetic variants of the BMP4 gene which could be associated in the pathogenesis of non-syndromic CL/CLP or CP in humans (PMID: 21331089,18771417,19249007,19839778). After in house clinical team review of this gene, it was noted the evidence only came only from association studies, therefore this gene should be red or amber, as a variant in this gene would not provide a diagnosis. Changed status from Amber to Red.
Created: 20 Mar 2017, 10:27 a.m.
Publications
Usha Kini (Oxford Centre for Genomic Medicine)
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Victorian Clinical Genetics Services
- Expert Review Red
- Illumina TruGenome Clinical Sequencing Services
- Radboud University Medical Center, Nijmegen
- Phenotypes
-
- Orofacial cleft 11, 600625
- Cleft Lip with or without Cleft Palate
- Orofacial Cleft
- Cleft lip with or without cleft palate, non syndromic, 11
- MICROPHTHALMIA, SYNDROMIC 6
- MCOPS6, OROFACIAL CLEFT 11
- OFC11
- Cleft lip
- OMIM
- 112262
- Clinvar variants
- Variants in BMP4
- Penetrance
- Complete
- Panels with this gene
-
- Limb disorders
- Deafness and congenital structural abnormalities
- Unexplained kidney failure in young people
- Retinal disorders
- DDG2P
- Ocular coloboma
- Clefting
- Stickler syndrome
- Unexplained young onset end-stage renal disease - additional genes
- Structural eye disease
- Monogenic hearing loss
- Fetal anomalies
- Pituitary hormone deficiency
- Glaucoma (developmental)
- Rare syndromic craniosynostosis or isolated multisuture synostosis
- Anophthalmia or microphthalmia
- Intellectual disability
- CAKUT
History Filter Activity
Added New Source, Set penetrance
Ellen McDonagh (Genomics England Curator)Victorian Clinical Genetics Services was added to BMP4. Panel: Clefting Phenotypes for gene BMP4 were set to Orofacial cleft 11, 600625, Cleft Lip with or without Cleft Palate, Orofacial Cleft, Cleft lip with or without cleft palate, non syndromic, 11, MICROPHTHALMIA, SYNDROMIC 6, MCOPS6, OROFACIAL CLEFT 11, OFC11, Cleft lip
panel promoted to version 1
Louise Daugherty (Genomics England Curator)Panel reviews were assessed, and panel was revised according to reviews and further curation 31st May 2017
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Added New Source
Ellen McDonagh (Genomics England Curator)BMP4 was added to Cleftingpanel. Source: Expert Review Amber
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for gene BMP4 were set to Orofacial cleft 11, 600625;Cleft Lip with or without Cleft Palate; Orofacial Cleft; Cleft lip with or without cleft palate, non syndromic, 11
Set Mode of Inheritance, Added New Source
Olivia Niblock (Genomics England Curator)BMP4 was added to Cleftingpanel. Source: Illumina TruGenome Clinical Sequencing Services Model of inheritance for gene BMP4 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Created
Olivia Niblock (Genomics England Curator)BMP4 was created by oniblock
Added New Source
Olivia Niblock (Genomics England Curator)BMP4 was added to Cleftingpanel. Sources: Radboud University Medical Center, Nijmegen