Hereditary neuropathy
Gene: SYT2EnsemblGeneIds (GRCh38): ENSG00000143858
EnsemblGeneIds (GRCh37): ENSG00000143858
OMIM: 600104, Gene2Phenotype
SYT2 is in 7 panels
7 reviews
Natalie Forrester (SWGLH - Bristol Genetics)
Possibly 2 families, clinical judgement required. PMID: 30533528 - missense variant in proband and mother (both affected). Characterization in Drosophila - dominant-negative effect on neurotransmitter release. PMID: 26519543 - 2 multigenerational families with dominant SYT2 mutations. Electrophysiologic testing revealed features indicative of a presynaptic deficit in neurotransmitter releaseCreated: 29 Apr 2019, 12:30 p.m.
Phenotypes
Myasthenic syndrome, congenital, 7, presynaptic
Publications
Variants in this GENE are reported as part of current diagnostic practice
Louise Daugherty (Genomics England Curator)
As a result of watchlist tag audit the watchlist tag was kept as still relevant to this gene, it was made green on this panel as it represents a broad phenotypeCreated: 13 Jan 2020, 3:16 p.m. | Last Modified: 13 Jan 2020, 3:16 p.m.
Panel Version: 1.368
The Neurology Specialist Test Group agreed that this gene was recommended for the WGS panel based on a broader phenotype view to include conditions where neuropathy is part of a more complex phenotype or where there is overlap with another neurological presentation eg. HSP. This panel includes conditions where neuropathy is part of a more complex phenotype or where there is overlap with another neurological presentation. This panel as going to be used for R78, but subsequently during the follow up call on 21st June with the Test Group it was agreed that it was more clinically relevant for R78 to be restricted to genes that are associated with isolated neuropathy and as a result a new panel was created https://panelapp.genomicsengland.co.uk/panels/846/ for this purpose.Created: 7 Dec 2019, 6:08 p.m. | Last Modified: 7 Dec 2019, 6:08 p.m.
Panel Version: 1.352
Rating and review submitted on behalf of James Polke (Neurogenetics Laboratory,Institute of Neurology, London), on behalf of London North GLH for GMS Neurology specialist test group.Created: 9 May 2019, 5 p.m.
Review and rating submitted by Natalie Forrester (SWGLH - Bristol Genetics) on behalf of South West GLH for GMS Neurology specialist test group.Created: 29 Apr 2019, 12:53 p.m.
James Polke (Neurogenetics Laboratory, Institute of Neurology, London)
Ellen McDonagh (Genomics England Curator)
Added the tags 'watchlist' and 'missense' as there are 2 multigenerational families reported, and only missense variants reported.Created: 27 Jun 2018, 4:50 p.m.
Comment on publications: Two publications the same two variants identified in two mult-generational families - Pro308Leu and Asp307Ala.Created: 29 Mar 2018, 2:19 p.m.
Rita Horvath (Institute of Genetic Medicine, Newcastle University)
only 2 missense mutations are reportedCreated: 9 Dec 2015, 4:49 p.m.
Variants in this GENE are reported as part of current diagnostic practice
Alexander Rossor (UCL Institute of Neurology)
Myasthenic syndromeCreated: 9 Dec 2015, 8:50 a.m.
Mary Reilly (Institute of Neurology)
Myasthenic syndromeCreated: 8 Dec 2015, 3:06 p.m.
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Expert Review Green
- South West GLH
- NHS GMS
- London North GLH
- Expert list
- Phenotypes
-
- Myasthenic syndrome, congenital, 7, presynaptic, 616040
- Tags
- OMIM
- 600104
- Clinvar variants
- Variants in SYT2
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for gene: SYT2 were changed from Myasthenic syndrome, congenital, 7, presynaptic to Myasthenic syndrome, congenital, 7, presynaptic, 616040
Set mode of inheritance
Louise Daugherty (Genomics England Curator)Mode of inheritance for gene: SYT2 was changed from to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Added New Source, Status Update
Louise Daugherty (Genomics England Curator)Source Expert Review Green was added to SYT2. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)
Set Phenotypes, Set publications
Louise Daugherty (Genomics England Curator)Added phenotypes Myasthenic syndrome, congenital, 7, presynaptic for gene: SYT2 Publications for gene SYT2 were changed from 25192047; 26519543 to 26519543; 30533528
Added New Source
Louise Daugherty (Genomics England Curator)Source South West GLH was added to SYT2.
Added New Source
Louise Daugherty (Genomics England Curator)Source NHS GMS was added to SYT2.
Added New Source
Louise Daugherty (Genomics England Curator)Source London North GLH was added to SYT2.
Entity classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)Gene: syt2 has been classified as Amber List (Moderate Evidence).
Set publications
Ellen McDonagh (Genomics England Curator)Publications for gene: SYT2 were set to 25192047; 26519543
Set publications
Ellen McDonagh (Genomics England Curator)Publications for gene: SYT2 were set to 25192047; 26519543; 25192047
Set publications
Ellen McDonagh (Genomics England Curator)Publications for SYT2 were set to 25192047; 26519543
Set Phenotypes
Ellen McDonagh (Genomics England Curator)Phenotypes for SYT2 were set to Myasthenic syndrome, congenital, 7, presynaptic
Added New Source
Ellen McDonagh (Genomics England Curator)SYT2 was added to Charcot-Marie-Tooth diseasepanel. Sources: Expert list