Hereditary neuropathy
Gene: SPTLC1
2 variants in 3 different probands with sensory neuropathy in Bristol. PMID: 20097765 - showed that the pathological mechanism in HSAN1 is the accumulation of neurotoxic metabolites rather than the reduced de novo sphingolipid synthesis i.e. stated that gain of function mechanism. PMID: 16216550 - heterozygous SPTLC1 and SPTLC2 knock-out mice, which have a significantly reduced SPT activity, do not develop neuropathic symptomsCreated: 29 Apr 2019, 12:30 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Neuropathy, hereditary sensory and autonomic, type IA, 162400 ; Hereditary Sensory and Autonomic Neuropathy, Type II ; Neuropathy, hereditary sensory and autonomic, type IA, 162400
Publications
Variants in this GENE are reported as part of current diagnostic practice
Rating and review submitted on behalf of James Polke (Neurogenetics Laboratory,Institute of Neurology, London), on behalf of London North GLH for GMS Neurology specialist test group.Created: 9 May 2019, 5 p.m.
Review and rating submitted by Natalie Forrester (SWGLH - Bristol Genetics) on behalf of South West GLH for GMS Neurology specialist test group.Created: 29 Apr 2019, 12:53 p.m.
Variants in this GENE are reported as part of current diagnostic practice
Mode of pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype -please provide details in the comments
Variants in this GENE are reported as part of current diagnostic practice
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Comment on mode of inheritance: Changed due to feedback from QC team.Created: 13 Mar 2017, 5:01 p.m.
This gene is in the Charcot Marie Tooth Disease section in the UCLH National Hospital for Neurology and Neurosurgery & Institute of Neurology (NHNN) Neurogenetics genetic testing manual, for testing of Hereditary Sensory and Autonomic Neuropathy.Created: 10 Jun 2016, 1:20 p.m.
Comment on list classification: 4 reviewers agreeing.Created: 10 May 2016, 10:58 a.m.
Disease due to toxic deoxysphingolipidsCreated: 9 Dec 2015, 8:48 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Mode of pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype -please provide details in the comments
Variants in this GENE are reported as part of current diagnostic practice
Disease due to toxic deoxysphingolipidsCreated: 8 Dec 2015, 3:05 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Mode of pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype -please provide details in the comments
Variants in this GENE are reported as part of current diagnostic practice
Added phenotypes Hereditary Sensory and Autonomic Neuropathy, Type II; Neuropathy, hereditary sensory and autonomic, type IA, 162400 for gene: SPTLC1 Publications for gene SPTLC1 were changed from to 16216550; 20097765
Source South West GLH was added to SPTLC1.
Source NHS GMS was added to SPTLC1.
Source London North GLH was added to SPTLC1. Rating Changed from Green List (high evidence) to Green List (high evidence)
Mode of inheritance for SPTLC1 was changed to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
This gene has been classified as Green List (High Evidence).
This gene has been classified as Green List (High Evidence).
Model of inheritance for gene SPTLC1 was changed to BIALLELIC, autosomal or pseudoautosomal
Model of inheritance for gene SPTLC1 was changed to BIALLELIC, autosomal or pseudoautosomal
Model of inheritance for gene SPTLC1 was changed to BIALLELIC, autosomal or pseudoautosomal
Model of inheritance for gene SPTLC1 was changed to BIALLELIC, autosomal or pseudoautosomal
Model of inheritance for gene SPTLC1 was changed to BIALLELIC, autosomal or pseudoautosomal
Model of inheritance for gene SPTLC1 was changed to BIALLELIC, autosomal or pseudoautosomal
SPTLC1 was added to Charcot-Marie-Tooth diseasepanel. Sources: Radboud University Medical Center, Nijmegen,Illumina TruGenome Clinical Sequencing Services,Expert list,UKGTN,Emory Genetics Laboratory
Model of inheritance for gene SPTLC1 was changed to BIALLELIC, autosomal or pseudoautosomal
SPTLC1 was added to Charcot-Marie-Tooth diseasepanel. Sources: Radboud University Medical Center, Nijmegen,Illumina TruGenome Clinical Sequencing Services,Expert list,UKGTN,Emory Genetics Laboratory
Model of inheritance for gene SPTLC1 was changed to BIALLELIC, autosomal or pseudoautosomal
SPTLC1 was added to Charcot-Marie-Tooth diseasepanel. Sources: Radboud University Medical Center, Nijmegen,Illumina TruGenome Clinical Sequencing Services,Expert list,UKGTN,Emory Genetics Laboratory
Model of inheritance for gene SPTLC1 was changed to BIALLELIC, autosomal or pseudoautosomal
SPTLC1 was added to Charcot-Marie-Tooth diseasepanel. Sources: Radboud University Medical Center, Nijmegen,Illumina TruGenome Clinical Sequencing Services,Expert list,UKGTN,Emory Genetics Laboratory
SPTLC1 was added to Charcot-Marie-Tooth diseasepanel. Sources: Radboud University Medical Center, Nijmegen,Illumina TruGenome Clinical Sequencing Services,Expert list,UKGTN,Emory Genetics Laboratory