Mitochondrial disorders
Gene: PANK2EnsemblGeneIds (GRCh38): ENSG00000125779
EnsemblGeneIds (GRCh37): ENSG00000125779
OMIM: 606157, Gene2Phenotype
PANK2 is in 12 panels
4 reviews
Sarah Leigh (Genomics England Curator)
The rating of this gene has been updated to green and the mode of inheritance set to BIALLELIC, autosomal or pseudoautosomal following NHS Genomic Medicine Service approval.Created: 2 May 2024, 10:34 a.m. | Last Modified: 2 May 2024, 10:34 a.m.
Panel Version: 6.3
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Achchuthan Shanmugasundram (Genomics England Curator)
Comment on list classification: As reviewed by Zornitza Stark, PANK2 is a mitochondrial enzyme and there is sufficient evidence for promoting this gene to green rating at the next major update.Created: 16 Aug 2023, 11:29 a.m. | Last Modified: 16 Aug 2023, 11:29 a.m.
Panel Version: 4.77
This gene has been associated with relevant phenotypes in both OMIM (MIMs #607236 & #234200) and in Gene2Phenotype (HARP syndrome with 'definitive' rating in the eye panel).Created: 16 Aug 2023, 11:26 a.m. | Last Modified: 16 Aug 2023, 11:26 a.m.
Panel Version: 4.76
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
HARP syndrome, OMIM:607236; Neurodegeneration with brain iron accumulation 1, OMIM:234200
Zornitza Stark (Australian Genomics)
A mitochondrial enzyme, which phosphorylates vitamin B5 in the first reaction of the CoA biosynthetic pathway (a relevant mitochondrial cofactor). >3 cases reported. We have included it in our mitochondrial panel in line with the groupings suggested by PMID: 25778941Created: 23 Mar 2020, 12:18 a.m. | Last Modified: 23 Mar 2020, 12:18 a.m.
Panel Version: 2.5
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
HARP syndrome MIM#607236; Neurodegeneration with brain iron accumulation 1 MIM#234200
Publications
Variants in this GENE are reported as part of current diagnostic practice
Shamima Rahman (UCL Institute of Child Health)
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- NHS GMS
- Radboud University Medical Center, Nijmegen
- Phenotypes
-
- HARP syndrome, OMIM:607236
- Neurodegeneration with brain iron accumulation 1, OMIM:234200
- OMIM
- 606157
- Clinvar variants
- Variants in PANK2
- Penetrance
- Complete
- Publications
- Panels with this gene
-
- Mitochondrial disorders
- Structural basal ganglia disorders
- Retinal disorders
- Parkinson Disease and Complex Parkinsonism
- Likely inborn error of metabolism
- Early onset dystonia
- Childhood onset dystonia, chorea or related movement disorder
- Intellectual disability
- Possible mitochondrial disorder - nuclear genes
- Adult onset dystonia, chorea or related movement disorder
- Undiagnosed metabolic disorders
- Adult onset neurodegenerative disorder
History Filter Activity
Removed Tag
Achchuthan Shanmugasundram (Genomics England Curator)Tag Q3_23_promote_green was removed from gene: PANK2.
Added New Source, Added New Source, Status Update
Achchuthan Shanmugasundram (Genomics England Curator)Source NHS GMS was added to PANK2. Source Expert Review Green was added to PANK2. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)
Set publications
Achchuthan Shanmugasundram (Genomics England Curator)Publications for gene: PANK2 were set to 11479594; 12510040; 25778941; 28863176
Set publications
Achchuthan Shanmugasundram (Genomics England Curator)Publications for gene: PANK2 were set to 25778941; 11479594; 12510040; 28863176; 25778941
Added Tag
Achchuthan Shanmugasundram (Genomics England Curator)Tag Q3_23_promote_green tag was added to gene: PANK2.
Entity classified by Genomics England curator
Achchuthan Shanmugasundram (Genomics England Curator)Gene: pank2 has been classified as Amber List (Moderate Evidence).
Entity classified by Genomics England curator
Achchuthan Shanmugasundram (Genomics England Curator)Gene: pank2 has been classified as Amber List (Moderate Evidence).
Set Phenotypes
Achchuthan Shanmugasundram (Genomics England Curator)Phenotypes for gene: PANK2 were changed from Neurodegeneration with brain iron accumulation 1, 234200HARP syndrome, 607236 to HARP syndrome, OMIM:607236; Neurodegeneration with brain iron accumulation 1, OMIM:234200
Set publications
Achchuthan Shanmugasundram (Genomics England Curator)Publications for gene: PANK2 were set to 25778941; 11479594; 12510040; 28863176; 25778941
Set publications
Achchuthan Shanmugasundram (Genomics England Curator)Publications for gene: PANK2 were set to
Set mode of inheritance
Achchuthan Shanmugasundram (Genomics England Curator)Mode of inheritance for gene: PANK2 was changed from BIALLELIC, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal
Set mode of inheritance
Achchuthan Shanmugasundram (Genomics England Curator)Mode of inheritance for gene: PANK2 was changed from to BIALLELIC, autosomal or pseudoautosomal
Added New Source
Ellen McDonagh (Genomics England Curator)PANK2 was added to All recognised syndromes and those with suggestive featurespanel. Sources: Radboud University Medical Center, Nijmegen