Mitochondrial disorders
Gene: SLC52A3EnsemblGeneIds (GRCh38): ENSG00000101276
EnsemblGeneIds (GRCh37): ENSG00000101276
OMIM: 613350, Gene2Phenotype
SLC52A3 is in 15 panels
2 reviews
Zornitza Stark (Australian Genomics)
The phenotype of resembles that of many mitochondrial disorders and Drosophila model implicates mitochondrial dysfunction as a downstream consequence of riboflavin transporter gene defects.Created: 23 Mar 2020, 3:42 a.m. | Last Modified: 23 Mar 2020, 3:42 a.m.
Panel Version: 2.5
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Brown-Vialetto-Van Laere syndrome 1, MIM#211530
Publications
Sarah Leigh (Genomics England Curator)
The rating of this gene has been updated to green and the mode of inheritance updated to BOTH monoallelic and biallelic, autosomal or pseudoautosomal following NHS Genomic Medicine Service approval.Created: 2 May 2024, 10:34 a.m. | Last Modified: 2 May 2024, 10:34 a.m.
Panel Version: 6.3
Comment on list classification: There is enough evidence for this gene to be rated GREEN at the next major review.Created: 12 Oct 2023, 2:56 p.m. | Last Modified: 12 Oct 2023, 2:56 p.m.
Panel Version: 4.99
PMIDs 29053833 & 29193829 report a total of 11 unrelated cases of Brown-Vialetto-Van Laere syndrome 1 (OMIM:211530) carrying a total of 14 SLC52A3 variants. Functional studies and histological observations allow the authors to conclude that the resultant riboflavin transporter deficiency associated with the SLC52A3 variants, causes a mitochondrial dysfunction. Furthermore, the loss of the SLC52A2/SLC52A3 homologue in Drosophila melanogaster resulted in abnormal mitochondrial membrane potential, respiratory chain activity and morphology.
Nine of the SLC52A3 variants occur as either homozygotes or as compound heterozygotes in PMID: 29053833, a further five variants are seen as heterozygotes. The authors comment that the heterozygous individuals did not differ substantially in phenotype including age of presentation from the rest of the cohort of mutation-positive cases.Created: 12 Oct 2023, 2:52 p.m. | Last Modified: 12 Oct 2023, 2:52 p.m.
Panel Version: 4.97
Initial gene list and info collated by Carl Fratter (Oxford University Hospitals NHS Trust) January 2019 on behalf of the GMS Mitochondrial specialist test group.Created: 23 Jul 2019, 10:13 a.m. | Last Modified: 23 Jul 2019, 10:13 a.m.
Panel Version: 1.412
Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Details
- Mode of Inheritance
- BOTH monoallelic and biallelic, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- NHS GMS
- Phenotypes
-
- Brown-Vialetto-Van Laere syndrome 1, OMIM:211530
- Brown-Vialetto-van Laere syndrome 1, MONDO:0024537
- OMIM
- 613350
- Clinvar variants
- Variants in SLC52A3
- Penetrance
- None
- Publications
- Panels with this gene
-
- Undiagnosed metabolic disorders
- Likely inborn error of metabolism
- Adult onset neurodegenerative disorder
- Mitochondrial disorders
- Intellectual disability
- Arthrogryposis
- Paediatric motor neuronopathies
- Monogenic hearing loss
- Childhood onset dystonia, chorea or related movement disorder
- Hereditary neuropathy or pain disorder
- DDG2P
- Possible mitochondrial disorder - nuclear genes
- Amyotrophic lateral sclerosis/motor neuron disease
- Hereditary neuropathy
- Fetal anomalies
History Filter Activity
Removed Tag, Removed Tag
Achchuthan Shanmugasundram (Genomics England Curator)Tag Q4_23_promote_green was removed from gene: SLC52A3. Tag Q4_23_MOI was removed from gene: SLC52A3.
Added New Source, Set mode of inheritance, Status Update
Achchuthan Shanmugasundram (Genomics England Curator)Source Expert Review Green was added to SLC52A3. Mode of inheritance for gene SLC52A3 was changed from BIALLELIC, autosomal or pseudoautosomal to BOTH monoallelic and biallelic, autosomal or pseudoautosomal Rating Changed from Amber List (moderate evidence) to Green List (high evidence)
Entity classified by Genomics England curator
Sarah Leigh (Genomics England Curator)Gene: slc52a3 has been classified as Amber List (Moderate Evidence).
Added Tag, Added Tag
Sarah Leigh (Genomics England Curator)Tag Q4_23_promote_green tag was added to gene: SLC52A3. Tag Q4_23_MOI tag was added to gene: SLC52A3.
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for gene: SLC52A3 were changed from Brown-Vialetto-Van Laere syndrome 1, 211530 to Brown-Vialetto-Van Laere syndrome 1, OMIM:211530; Brown-Vialetto-van Laere syndrome 1, MONDO:0024537
Set publications
Sarah Leigh (Genomics England Curator)Publications for gene: SLC52A3 were set to
Created, Added New Source, Set mode of inheritance, Set Phenotypes
Sarah Leigh (Genomics England Curator)gene: SLC52A3 was added gene: SLC52A3 was added to Mitochondrial disorders. Sources: NHS GMS,Expert Review Red Mode of inheritance for gene: SLC52A3 was set to BIALLELIC, autosomal or pseudoautosomal Phenotypes for gene: SLC52A3 were set to Brown-Vialetto-Van Laere syndrome 1, 211530