Peroxisomal disorders
Gene: AGKEnsemblGeneIds (GRCh38): ENSG00000006530
EnsemblGeneIds (GRCh37): ENSG00000006530
OMIM: 610345, Gene2Phenotype
AGK is in 14 panels
2 reviews
Zornitza Stark (Australian Genomics)
This is a mitochondrial condition and is not relevant to this panel.Created: 20 Jul 2020, 9:02 a.m. | Last Modified: 20 Jul 2020, 9:02 a.m.
Panel Version: 1.6
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Cataract 38, autosomal recessive, MIM# 614691; Sengers syndrome, MIM# 212350
Sarah Leigh (Genomics England Curator)
Associated with phenotype in OMIM and G2P. At least nine variants reported for Sengers syndrome 212350, clinical opinion (Richard Scott) confirms that this phenotype is relevant for this panel.
The wrong phenotype is associated with this gene in Radboud University MENDELIOME GENE PANEL DG 2.5.x, this lists Hyperoxaluria, primary, type 1, 259900 which is actually associated with AGXTCreated: 7 Sep 2016, 8:07 a.m.
Comment on list classification: Sufficient variants reported in Sengers syndromeCreated: 7 Sep 2016, 7:55 a.m.
Comment on phenotypes: Also associated with Cataract 38, autosomal recessive 614691Created: 23 Aug 2016, 8:46 a.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Illumina TruGenome Clinical Sequencing Services
- Phenotypes
-
- Sengers syndrome 212350
- OMIM
- 610345
- Clinvar variants
- Variants in AGK
- Penetrance
- Complete
- Panels with this gene
-
- Structural eye disease
- Mitochondrial disorders
- Intellectual disability
- Paediatric or syndromic cardiomyopathy
- Nephrocalcinosis or nephrolithiasis
- Peroxisomal disorders
- Mitochondrial DNA maintenance disorder
- Likely inborn error of metabolism
- Childhood onset dystonia, chorea or related movement disorder
- Bilateral congenital or childhood onset cataracts
- Possible mitochondrial disorder - nuclear genes
- Undiagnosed metabolic disorders
- Fetal anomalies
- DDG2P
History Filter Activity
panel promoted to version 1
Sarah Leigh (Genomics England Curator)Promoted to V1 3rd October 2016
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for AGK were set to Sengers syndrome 212350
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for AGK were set to Cataract 38, autosomal recessive 614691; Sengers syndrome 212350
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for AGK were set to Hyperoxaluria, primary, type 1, 259900
Set Mode of Inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for AGK was changed to BIALLELIC, autosomal or pseudoautosomal
Upload gene information
Sarah Leigh (Genomics England Curator)AGK was added to Peroxisomal disorderspanel. Sources: Illumina TruGenome Clinical Sequencing Services
clearsources
Sarah Leigh (Genomics England Curator)AGKAll sources for gene: AGK were removed
Created
Sarah Leigh (Genomics England Curator)AGK was created by sleigh
Added New Source
Sarah Leigh (Genomics England Curator)AGK was added to Peroxisomal disorderspanel. Sources: Radboud University Medical Center, Nijmegen