Monogenic hearing loss
Gene: CLRN2EnsemblGeneIds (GRCh38): ENSG00000249581
EnsemblGeneIds (GRCh37): ENSG00000249581
CLRN2 is in 1 panel
2 reviews
Eleanor Williams (Genomics England Curator)
Comment on list classification: Promoting this gene from grey to amber as there is one extended family reported with variants in this gene, plus some supporting functional data.Created: 9 Jun 2021, 4:22 p.m. | Last Modified: 9 Jun 2021, 4:22 p.m.
Panel Version: 2.168
Provisionally associated with ?Deafness, autosomal recessive 117 #619174 (AR) in OMIM.
As Zornitza Stark reports PMID: 33496845 (Vona et al 2021) describes an extended Iranian consanguineous family with a homozygous missense variant in CLRN2 that segregates with non-syndromic hearing loss in the family. Identified by homozygosity mapping and then exome sequencing. in vitro RNA splicing assays demonstrate an effect on splicing and functional studies support a role in hearing.Created: 9 Jun 2021, 4:21 p.m. | Last Modified: 9 Jun 2021, 4:21 p.m.
Panel Version: 2.166
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Deafness, autosomal recessive 117, OMIM:619174; deafness, autosomal recessive 117, MONDO:0030905
Publications
Zornitza Stark (Australian Genomics)
Missense variant segregates with non-syndromic hearing loss in 3 members of a consanguineous family, two from one nuclear family and one from another. The variant was also shown to result in some transcripts being abnormally spliced, resulting in a premature stop codon.
Functional studies in zebrafish and mice show the gene plays an essential role in normal organization and maintenance of the auditory hair bundles, and for hearing function.
Rated Amber due to supporting functional studies in mice.
Sources: LiteratureCreated: 1 Feb 2021, 10:52 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Non-syndromic hearing loss
Publications
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Amber
- Phenotypes
-
- ?Deafness, autosomal recessive 117, OMIM:619174
- deafness, autosomal recessive 117, MONDO:0030905
- Clinvar variants
- Variants in CLRN2
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: clrn2 has been classified as Amber List (Moderate Evidence).
Set Phenotypes
Eleanor Williams (Genomics England Curator)Phenotypes for gene: CLRN2 were changed from Non-syndromic hearing loss to ?Deafness, autosomal recessive 117, OMIM:619174; deafness, autosomal recessive 117, MONDO:0030905
Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes
Zornitza Stark (Australian Genomics)gene: CLRN2 was added gene: CLRN2 was added to Hearing loss. Sources: Literature Mode of inheritance for gene: CLRN2 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: CLRN2 were set to 33496845 Phenotypes for gene: CLRN2 were set to Non-syndromic hearing loss Review for gene: CLRN2 was set to AMBER