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Monogenic hearing loss

Gene: PLCG1

Amber List (moderate evidence)

PLCG1 (phospholipase C gamma 1)
EnsemblGeneIds (GRCh38): ENSG00000124181
EnsemblGeneIds (GRCh37): ENSG00000124181
OMIM: 172420, Gene2Phenotype
PLCG1 is in 3 panels

3 reviews

Ida Ertmanska (Genomics England Curator)

Green List (high evidence)

Comment on list classification: There are now 3 unrelated individuals with heterozygous PLCG1 variants and hearing loss. Hence, this gene should be promoted to Green at the next update.
Created: 26 May 2026, 10:28 a.m. | Last Modified: 26 May 2026, 10:28 a.m.
Panel Version: 6.13
PMID: 40862571 Ma et al., 2025 (based on pre-print mentioned in previous reviews)
Report of seven individuals from 4 unrelated families with heterozygous missense variants in PLCG1: 3 individuals with de novo het variants: c.3056A>G, p.(Asp1019Gly)], [c.1139A>G, p.(His380Arg)] and [c.3494A>G, p.(Asp1165Gly)]. Individuals 4–7 are from the same family, and all carry the PLCG1 variant [c.1789C>T p.(Leu597Phe)].
Phenotypic spectrum: hearing loss (5/7, mild to profound), cardiac septal defects (3/6), and other less specific syndromic findings. Abnormal brain MRI findings in 2/3 assessed. Various immunological issues included:
P3: T lymphocytopenia, recurrent pulmonary infections;
P4: joint inflammation, tarsal synovitis, recurrent respiratory and lung infections, as well as inflammatory lymphadenopathy;
P5: immune thrombocytopenic purpura, polyarthritis, autoimmune pulmonary fibrosis, pneumococcal sepsis with chronic thrombocytopenia and IgA and IgG2 deficiency;
P6: history of recurrent upper respiratory and lung infections due to a mild IgA and IgG2 deficiency;

PMID: 37422272 Tao et al., 2024
7yo female patient with a de novo p.S1021F variant in PLCG1 and early-onset immune dysregulation disease: recurrent skin ecchymosis, epistaxis and gingival bleeding, lymphadenopathy.
Created: 12 May 2026, 2:53 p.m. | Last Modified: 12 May 2026, 2:53 p.m.
Panel Version: 6.7

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
?Immune dysregulation, autoimmunity, and autoinflammation, OMIM:620514

Publications

Sarah Leigh (Genomics England Curator)

I don't know

If PMID: 38260438 is accepted for publication, a green recommendation for PLCG1 would be made.
Created: 11 Nov 2024, 3:47 p.m. | Last Modified: 11 Nov 2024, 3:47 p.m.
Panel Version: 4.60
If the preprint PMID: 38260438 is accepted for publication, a green recommendation would be made for PLCG1.
Created: 11 Nov 2024, 3:44 p.m. | Last Modified: 11 Nov 2024, 3:44 p.m.
Panel Version: 4.60

Hannah Knight (NIHR BioResource - University of Cambridge)

I don't know

Limited case info in preprint, but PMID: 38260438 (2024) reported three unrelated individuals with de novo heterozygous missense variants in PLCG1, with symptoms including deafness, ophthalmologic abnormalities, cardiac septal defects, abnormal brain MRI and immune defects
Sources: Literature
Created: 18 Oct 2024, 10:29 a.m.

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
hearing impairment; ophthalmologic abnormalities; cardiac septal defects

Publications

Details

Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
Phenotypes
  • ?Immune dysregulation, autoimmunity, and autoinflammation, OMIM:620514
  • immune dysregulation, autoimmunity, and autoinflammation, MONDO:0957790
  • hearing loss disorder, MONDO:0005365
Tags
Q2_26_promote_green
OMIM
172420
Clinvar variants
Variants in PLCG1
Penetrance
None
Publications
Panels with this gene

History Filter Activity

12 May 2026, Gel status: 2

Set Phenotypes

Ida Ertmanska (Genomics England Curator)

Phenotypes for gene: PLCG1 were changed from ?Immune dysregulation, autoimmunity, and autoinflammation, OMIM:620514; immune dysregulation, autoimmunity, and autoinflammation, MONDO:0957790 to ?Immune dysregulation, autoimmunity, and autoinflammation, OMIM:620514; immune dysregulation, autoimmunity, and autoinflammation, MONDO:0957790; hearing loss disorder, MONDO:0005365

12 May 2026, Gel status: 2

Set Phenotypes

Ida Ertmanska (Genomics England Curator)

Phenotypes for gene: PLCG1 were changed from hearing impairment; ophthalmologic abnormalities; cardiac septal defects to ?Immune dysregulation, autoimmunity, and autoinflammation, OMIM:620514; immune dysregulation, autoimmunity, and autoinflammation, MONDO:0957790

12 May 2026, Gel status: 2

Set publications

Ida Ertmanska (Genomics England Curator)

Publications for gene: PLCG1 were set to 38260438

12 May 2026, Gel status: 2

Removed Tag, Added Tag

Ida Ertmanska (Genomics England Curator)

Tag watchlist was removed from gene: PLCG1. Tag Q2_26_promote_green tag was added to gene: PLCG1.

30 Jun 2025, Gel status: 2

Added Tag

Arina Puzriakova (Genomics England Curator)

Tag watchlist tag was added to gene: PLCG1.

11 Nov 2024, Gel status: 2

Set publications

Sarah Leigh (Genomics England Curator)

Publications for gene: PLCG1 were set to PMID: 38260438

11 Nov 2024, Gel status: 2

Entity classified by Genomics England curator

Sarah Leigh (Genomics England Curator)

Gene: plcg1 has been classified as Amber List (Moderate Evidence).

18 Oct 2024, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Hannah Knight (NIHR BioResource - University of Cambridge)

gene: PLCG1 was added gene: PLCG1 was added to Monogenic hearing loss. Sources: Literature Mode of inheritance for gene: PLCG1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: PLCG1 were set to PMID: 38260438 Phenotypes for gene: PLCG1 were set to hearing impairment; ophthalmologic abnormalities; cardiac septal defects Review for gene: PLCG1 was set to AMBER