Monogenic hearing loss
Gene: SLC29A3EnsemblGeneIds (GRCh38): ENSG00000198246
EnsemblGeneIds (GRCh37): ENSG00000198246
OMIM: 612373, Gene2Phenotype
SLC29A3 is in 13 panels
3 reviews
Maria Bitner-Glindzicz (UCL)
Ellen McDonagh (Genomics England Curator)
Comment on list classification: Demoted from amber to red after expert review. Mutations in this gene have been associated with histocytosis-lymphadenopathy plus syndrome, and patients may have sensorineural deafness/hearing loss included as part of their symptoms.Created: 23 Feb 2016, 12:32 p.m.
Jun Shen (Harvard Medical School)
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
#602782:Histiocytosis-lymphadenopathy plus syndrome[Short stature; Submandibular lymphadenopathy; Hearing loss, sensorineural; Histiocytic deposits in eyelidsEyelid infiltratesOrbital mass due to histiocytosisExophthalmosEpiscleritis; Nasal mass due to histiocytosis; Retropharyngeal lymphadenopathy; Cervical lymphadenopathy; Atrial septal defect (rare)Ventricular septal defect (rare)Septal thickening (rare)Mitral valve prolapse (rare)Cardiomegaly (rare)Bicommissural aortic valve (rare); Inguinal lymphadenopathy, bilateral, extending across suprapubic area; Hepatomegaly; Diabetes mellitus, insulin-dependentPancreatic exocrine deficiencyPancreatomegaly (rare)Pancreatic hypoplasia, mild (rare); Splenomegaly; Intrauterine fractures of long bones and clavicles; Contractures of elbows; Contractures of fingersCamptodactylyClinodactyly; Contractures of toesHallux valgus; Retroperitoneal fibrosis (rare); Fever; Diabetes mellitus, insulin-dependentHypergonadotropic hypogonadismHypogonadotropic hypogonadism (rare)Growth hormone deficiency; Nonclonal myeloproliferation; Hyperglobulinemia, polyclonal (in some patients)Lymphadenopathy, generalized (in some patients); Elevated inflammatory markers]
Publications
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Red
- Emory Genetics Laboratory
- Illumina TruGenome Clinical Sequencing Services
- Phenotypes
-
- Histiocytosis-lymphadenopathy plus syndrome, OMIM:602782
- Hyperpigmentation, Cutaneous, with Hypertrichosis, Hepatosplenomegaly, Heart Anomalies, Hearing Loss, and Hypogonadism
- OMIM
- 612373
- Clinvar variants
- Variants in SLC29A3
- Penetrance
- Complete
- Publications
- Panels with this gene
-
- Primary immunodeficiency or monogenic inflammatory bowel disease
- Hypogonadotropic hypogonadism (GMS)
- Hypogonadotropic hypogonadism
- Monogenic diabetes
- Arthrogryposis
- Monogenic hearing loss
- Skeletal dysplasia
- Fetal anomalies
- Pigmentary skin disorders
- COVID-19 research
- Familial diabetes
- Diabetes with additional phenotypes suggestive of a monogenic aetiology
- Autoinflammatory disorders
History Filter Activity
Set Phenotypes
Arina Puzriakova (Genomics England Curator)Phenotypes for gene: SLC29A3 were changed from Histiocytosis-lymphadenopathy plus syndrome; Hyperpigmentation, Cutaneous, with Hypertrichosis, Hepatosplenomegaly, Heart Anomalies, Hearing Loss, and Hypogonadism to Histiocytosis-lymphadenopathy plus syndrome, OMIM:602782; Hyperpigmentation, Cutaneous, with Hypertrichosis, Hepatosplenomegaly, Heart Anomalies, Hearing Loss, and Hypogonadism
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Set Phenotypes
Ellen McDonagh (Genomics England Curator)Phenotypes for SLC29A3 were set to Histiocytosis-lymphadenopathy plus syndrome; Hyperpigmentation, Cutaneous, with Hypertrichosis, Hepatosplenomegaly, Heart Anomalies, Hearing Loss, and Hypogonadism
Set publications
Ellen McDonagh (Genomics England Curator)Publications for SLC29A3 were set to PMID: 15701636; 16118898; 16155931; 16650224; 17461801; 18940313; 18947330; 19175903; 19889517; 20140240; 20595384; 20619369; 21178579; 21888995; 22174130; 22238637; 22653152; 22875837; 23530176; 9545394
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene SLC29A3 was changed to BIALLELIC, autosomal or pseudoautosomal
Added New Source
Ellen McDonagh (Genomics England Curator)SLC29A3 was added to Congenital hearing impairment (Profound/Severe)panel. Sources: Illumina TruGenome Clinical Sequencing Services,Emory Genetics Laboratory
Added New Source
Ellen McDonagh (Genomics England Curator)SLC29A3 was added to Congenital hearing impairment (Profound/Severe)panel. Sources: Illumina TruGenome Clinical Sequencing Services,Emory Genetics Laboratory