Monogenic hearing loss
Gene: STX4EnsemblGeneIds (GRCh38): ENSG00000103496
EnsemblGeneIds (GRCh37): ENSG00000103496
OMIM: 186591, Gene2Phenotype
STX4 is in 1 panel
1 review
Achchuthan Shanmugasundram (Genomics England Curator)
Comment on list classification: This gene should be rated AMBER as it has been implicated in congenital hearing impairment, as identified from one family and supported by functional studies.Created: 23 Mar 2023, 5:33 p.m. | Last Modified: 23 Mar 2023, 5:33 p.m.
Panel Version: 4.5
Comment on list classification: This gene should be rated AMBER as it has been implicated in congenital hearing impairment, as identified from one family and supported by functional studies.Created: 23 Mar 2023, 5:33 p.m. | Last Modified: 23 Mar 2023, 5:33 p.m.
Panel Version: 4.5
Comment on list classification: This gene should be rated AMBER as it has been implicated in congenital hearing impairment, as identified from one family and supported by functional studies.Created: 23 Mar 2023, 5:32 p.m. | Last Modified: 23 Mar 2023, 5:32 p.m.
Panel Version: 4.5
PMID:36355422 reported a large consanguineous Pakistani family with eight affected individuals showing bilateral severe-to-profound hearing impairment. A homozygous splice region variant was identified in STX4 (c.232 + 6T>C), which causes exon skipping and a frameshift, that segregated with hearing impairment in this family.
In silico analysis showed that murine Stx4a is highly and widespread expressed in the developing and adult inner ear. Knockdown of stx4 in zebrafish showed an abnormal startle response, morphological and developmental defects, and a disrupted mechanotransduction function in neuromast hair cells.
This gene has not yet been associated with relevant phenotypes either in OMIM or in Gene2Phenotype.
Sources: LiteratureCreated: 23 Mar 2023, 5:31 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Hearing impairment, HP:0000365
Publications
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Amber
- Literature
- Phenotypes
-
- Hearing impairment, HP:0000365
- OMIM
- 186591
- Clinvar variants
- Variants in STX4
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Entity classified by Genomics England curator
Achchuthan Shanmugasundram (Genomics England Curator)Gene: stx4 has been classified as Amber List (Moderate Evidence).
Entity classified by Genomics England curator
Achchuthan Shanmugasundram (Genomics England Curator)Gene: stx4 has been classified as Amber List (Moderate Evidence).
Entity classified by Genomics England curator
Achchuthan Shanmugasundram (Genomics England Curator)Gene: stx4 has been classified as Amber List (Moderate Evidence).
Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes
Achchuthan Shanmugasundram (Genomics England Curator)gene: STX4 was added gene: STX4 was added to Monogenic hearing loss. Sources: Literature Mode of inheritance for gene: STX4 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: STX4 were set to 36355422 Phenotypes for gene: STX4 were set to Hearing impairment, HP:0000365 Review for gene: STX4 was set to AMBER