Nephrocalcinosis or nephrolithiasis
Gene: HPRT1EnsemblGeneIds (GRCh38): ENSG00000165704
EnsemblGeneIds (GRCh37): ENSG00000165704
OMIM: 308000, Gene2Phenotype
HPRT1 is in 11 panels
3 reviews
Detlef Bockenhauer (GOSH-UCL)
Should be green, as Lesch-Nyhan syndrome can be associated with urate stonesCreated: 30 Oct 2019, 11:59 a.m. | Last Modified: 30 Oct 2019, 11:59 a.m.
Panel Version: 1.23
Eleanor Williams (Genomics England Curator)
Comment on list classification: Promoting from red to green. > 3 unrelated cases with variants in this gene and Lesch-Nyhan syndrome with nephrocalcinosis as a feature are reported. Numerous variants are reported. Two publications.Created: 30 Oct 2019, 2:22 p.m. | Last Modified: 30 Oct 2019, 2:22 p.m.
Panel Version: 1.27
Associated with HPRT-related gout #300323 (XLR) and Lesch-Nyhan syndrome #300322 (XLR) in OMIM, both of which have Nephrolithiasis listed as a clinical feature.
HPRT encodes the Hypoxanthine-guanine phosphoribosyltransferase enzyme. Partial deficiency can result in the overproduction of uric acid leading to a severe form of gout, whilst a virtual absence of HPRT activity causes Lesch-Nyhan syndrome.
PMID: 31129767 - Cho et al 2019 - studied 26 Korean LNS patients from 23 unrelated families. Twenty one of the 23 LNS patients with available data (91.3%) showed renal manifestations such as hyperuricemia, nephrocalcinosis, or urinary stones. 16 patients from 13 families had nephrocalcinosis. Twenty different mutations in HPRT1 were identified from the 23 independent pedigrees.
PMID: 27079129 - Vargiami E et al 2016 - report of two cousins with Lesch-Nyhan syndrome and a confirmed novel HPRT gene mutation: c.65T>C, who both developed nephrocalcinosis and renal failure, findings not been previously published in children with HPRT deficiency.Created: 19 Oct 2019, 5:28 p.m. | Last Modified: 20 Oct 2019, 1:12 p.m.
Panel Version: 1.20
Ellen McDonagh (Genomics England Curator)
Mode of inheritance submitted by expert was "XLR", mapping to X-linked recessive = X-LINKED: hemizygous mutation in males, biallelic mutations in females.Created: 8 Jul 2015, 12:37 p.m.
Details
- Mode of Inheritance
- X-LINKED: hemizygous mutation in males, biallelic mutations in females
- Sources
-
- Expert Review Green
- Expert
- Phenotypes
-
- Hyperuricemia, HRPT-related, OMIM:300323
- Lesch-Nyhan syndrome, OMIM:300322
- OMIM
- 308000
- Clinvar variants
- Variants in HPRT1
- Penetrance
- Complete
- Publications
- Panels with this gene
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- Early onset or syndromic epilepsy
- Nephrocalcinosis or nephrolithiasis
- Adult onset neurodegenerative disorder
- Childhood onset dystonia, chorea or related movement disorder
- Intellectual disability
- Early onset dystonia
- Likely inborn error of metabolism
- Adult onset dystonia, chorea or related movement disorder
- Undiagnosed metabolic disorders
- DDG2P
- Fetal anomalies
History Filter Activity
Set Phenotypes
Arina Puzriakova (Genomics England Curator)Phenotypes for gene: HPRT1 were changed from Lesch-Nyhan syndrome, 300322 to Hyperuricemia, HRPT-related, OMIM:300323; Lesch-Nyhan syndrome, OMIM:300322
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: hprt1 has been classified as Green List (High Evidence).
Set Phenotypes
Eleanor Williams (Genomics England Curator)Phenotypes for gene: HPRT1 were changed from to Lesch-Nyhan syndrome, 300322
Set publications
Eleanor Williams (Genomics England Curator)Publications for gene: HPRT1 were set to
Added New Source
Eik Haraldsdottir (Genomics England)HPRT1 was added to Renal tract calcification (or Nephrolithiasis/nephrocalcinosis)panel. Sources: Expert