Limb girdle muscular dystrophies, myofibrillar myopathies and distal myopathies
Gene: POMGNT2EnsemblGeneIds (GRCh38): ENSG00000144647
EnsemblGeneIds (GRCh37): ENSG00000144647
OMIM: 614828, Gene2Phenotype
POMGNT2 is in 17 panels
7 reviews
Ellen McDonagh (Genomics England Curator)
Comment on mode of inheritance: Confirmed in OMIM for relevant phenotype.Created: 28 Nov 2019, 4:28 p.m. | Last Modified: 28 Nov 2019, 4:28 p.m.
Panel Version: 1.125
Comment on list classification: Promoted from Red to Green due to overall majority of Green reviews and clinical comments from GLH representatives.Created: 28 Nov 2019, 4:27 p.m. | Last Modified: 28 Nov 2019, 4:27 p.m.
Panel Version: 1.124
Chiara Marini Bettolo (NUTH)
Known form to muscular dystrophy.according to new classification is LGMDR24Created: 21 Oct 2019, 1:27 p.m. | Last Modified: 21 Oct 2019, 1:27 p.m.
Panel Version: 1.97
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Limb-girdle muscular dystrophy
Publications
Louise Daugherty (Genomics England Curator)
Review and rating from Natalie Forrester (SWGLH - Bristol Genetics) on behalf of South West GLH for GMS Neurology specialist test group.Created: 30 Apr 2019, 11:45 a.m.
Natalie Forrester (SWGLH - Bristol Genetics)
Need more papers. PMID:27066570 - Novel variants in POMGNT2 associated with milder forms of LGMD. In 3 unrelated Japanese patients with MDDGC8, identified homozygous or compound heterozygous missense mutations at highly conserved residues in the putative glycosyltransferase domain. Segregation studies in the families were not performed.Created: 30 Apr 2019, 11:24 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 8, 614830
Publications
Elizabeth Harris (Newcastle upon Tyne NHS Foundation Trust)
Given the clinical spectrum associated with this gene there is sufficient justification for including this gene in the LGMD panelCreated: 29 Mar 2019, 1:51 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
limb girdle muscular dystrophy
Publications
- PMID: 27066570
Sarah Leigh (Genomics England Curator)
Comment on list classification: No evidence from the four sources or OMIM for association of this gene with Limb girdle muscular dystrophy. Two variants identified in three patients with patients with the milder limb-girdle muscular dystrophy (PMID: 27066570).
Emma Clement comments: Insufficient evidence at the moment, however, based on the behaviour of the other genes in this pathway you would expect this gene to produce CMD and LGMD phenotypesCreated: 14 Jun 2016, 11:03 a.m.
Ellen Thomas (Genomics England Curator)
Comment on list classification: Only a handful of cases, all much more severe/syndromic.Created: 29 May 2016, 7:39 p.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Yorkshire and North East GLH
- NHS GMS
- South West GLH
- Radboud University Medical Center, Nijmegen
- Phenotypes
-
- Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 8, 614830
- limb girdle muscular dystrophy
- OMIM
- 614828
- Clinvar variants
- Variants in POMGNT2
- Penetrance
- Complete
- Publications
- Panels with this gene
-
- Retinal disorders
- DDG2P
- Cerebellar hypoplasia
- Limb girdle muscular dystrophies, myofibrillar myopathies and distal myopathies
- Malformations of cortical development
- Bilateral congenital or childhood onset cataracts
- Congenital disorders of glycosylation
- Likely inborn error of metabolism
- Hydrocephalus
- Ataxia and cerebellar anomalies - narrow panel
- Structural eye disease
- Arthrogryposis
- Fetal anomalies
- Undiagnosed metabolic disorders
- Congenital muscular dystrophy
- Intellectual disability
- Childhood onset dystonia, chorea or related movement disorder
History Filter Activity
Entity classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)Gene: pomgnt2 has been classified as Green List (High Evidence).
Set mode of inheritance
Ellen McDonagh (Genomics England Curator)Mode of inheritance for gene: POMGNT2 was changed from BIALLELIC, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal
Entity classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)Gene: pomgnt2 has been classified as Green List (High Evidence).
Added New Source
Louise Daugherty (Genomics England Curator)Source Yorkshire and North East GLH was added to POMGNT2.
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for gene: POMGNT2 were changed from Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 8, 614830 to Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 8, 614830; limb girdle muscular dystrophy
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for gene: POMGNT2 were changed from Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 8 614830 to Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 8, 614830
Added New Source
Louise Daugherty (Genomics England Curator)Source NHS GMS was added to POMGNT2.
Added New Source
Louise Daugherty (Genomics England Curator)Source South West GLH was added to POMGNT2.
panel promoted to version 1
Sarah Leigh (Genomics England Curator)Comments from Fiona Karet included. A Green review for each gene relevant for this panel on the Gene Advisor download has been included.
Set Mode of Inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for POMGNT2 was changed to BIALLELIC, autosomal or pseudoautosomal
Set publications
Sarah Leigh (Genomics England Curator)Publications for POMGNT2 were set to 27066570
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for POMGNT2 were set to Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 8 614830
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Set Mode of Inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for POMGNT2 was changed to BIALLELIC, autosomal or pseudoautosomal
Gene classified by Genomics England curator
Ellen Thomas (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Gene classified by Genomics England curator
Ellen Thomas (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Added New Source
Ellen McDonagh (Genomics England Curator)POMGNT2 was added to Limb girdle muscular dystrophypanel. Sources: Radboud University Medical Center, Nijmegen