Optic neuropathy
Gene: NSUN3EnsemblGeneIds (GRCh38): ENSG00000178694
EnsemblGeneIds (GRCh37): ENSG00000178694
OMIM: 617491, Gene2Phenotype
NSUN3 is in 4 panels
2 reviews
Ida Ertmanska (Genomics England Curator)
Comment on list classification: As reviewed by Neringa Jurkute, there are at least 6 unrelated families reported in literature with optic neuropathy (isolated or syndromic) and biallelic NSUN3 variants. Hence, this gene can be promoted to Green on Optic neuropathy at the next update.Created: 27 May 2026, 9:59 a.m. | Last Modified: 27 May 2026, 9:59 a.m.
Panel Version: 6.29
De Muiknck et al. 2024, PMID: 38790159: proband with childhood-onset bilateral OA and nystagmus; hom for frameshift variant c.349_352dup p.(Ala118Glufs*45) in NSUN3 (both parents het and unaffected sib het).
Jurkute et al. 2025, PMID: 40465263: 5 families (8 affected individuals) with biallelic variants in NSUN3 – phenotype from mild isolated OA to severe multisystem disease (“almost all” with OA).
NSUN3 is associated with AR Combined oxidative phosphorylation deficiency 48, OMIM:619012 (OMIM accessed 27th May 2026).Created: 27 May 2026, 9:57 a.m. | Last Modified: 27 May 2026, 9:57 a.m.
Panel Version: 6.28
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Combined oxidative phosphorylation deficiency 48, OMIM:619012
Publications
Neringa Jurkute (MD)
PMID: 40465263
Biallelic NSUN3 variants were reported to be associated with an early onset severe mitochondrial disorder characterized by combined mitochondrial respiratory chain complex deficiency.
2 individuals from the paper presented with LHON-like phenotype;
5 with attenuated
2 syndromic
Optic atrophy was unifying feature.
PMID: 38790159
Mutations in NSUN3, a Mitochondrial Methyl Transferase Gene, Cause Inherited Optic Neuropathy
Reports early onset optic neuropathy
A follow up par
Sources: Literature, ResearchCreated: 27 Nov 2025, 8:59 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
optic neuropathy; optic atrophy; LHON; LHON-like
Publications
Mode of pathogenicity
Other
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Amber
- Phenotypes
-
- Combined oxidative phosphorylation deficiency 48, OMIM:619012
- Tags
- OMIM
- 617491
- Clinvar variants
- Variants in NSUN3
- Penetrance
- None
- Publications
- Mode of Pathogenicity
- Other
- Panels with this gene
History Filter Activity
Set Phenotypes
Ida Ertmanska (Genomics England Curator)Phenotypes for gene: NSUN3 were changed from optic neuropathy; optic atrophy; LHON; LHON-like to Combined oxidative phosphorylation deficiency 48, OMIM:619012
Set publications
Ida Ertmanska (Genomics England Curator)Publications for gene: NSUN3 were set to PMID: 38790159; PMID: 40465263
Entity classified by Genomics England curator
Ida Ertmanska (Genomics England Curator)Gene: nsun3 has been classified as Amber List (Moderate Evidence).
Added Tag, Added Tag
Ida Ertmanska (Genomics England Curator)Tag Q2_26_promote_green tag was added to gene: NSUN3. Tag Q2_26_NHS_review tag was added to gene: NSUN3.
Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set mode of pathogenicity
Neringa Jurkute (MD)gene: NSUN3 was added gene: NSUN3 was added to Optic neuropathy. Sources: Literature,Research Mode of inheritance for gene: NSUN3 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: NSUN3 were set to PMID: 38790159; PMID: 40465263 Phenotypes for gene: NSUN3 were set to optic neuropathy; optic atrophy; LHON; LHON-like Mode of pathogenicity for gene: NSUN3 was set to Other Review for gene: NSUN3 was set to GREEN