Optic neuropathy

Gene: NSUN3

Amber List (moderate evidence)

NSUN3 (NOP2/Sun RNA methyltransferase family member 3)
EnsemblGeneIds (GRCh38): ENSG00000178694
EnsemblGeneIds (GRCh37): ENSG00000178694
OMIM: 617491, Gene2Phenotype
NSUN3 is in 4 panels

2 reviews

Ida Ertmanska (Genomics England Curator)

Green List (high evidence)

Comment on list classification: As reviewed by Neringa Jurkute, there are at least 6 unrelated families reported in literature with optic neuropathy (isolated or syndromic) and biallelic NSUN3 variants. Hence, this gene can be promoted to Green on Optic neuropathy at the next update.
Created: 27 May 2026, 9:59 a.m. | Last Modified: 27 May 2026, 9:59 a.m.
Panel Version: 6.29
De Muiknck et al. 2024, PMID: 38790159: proband with childhood-onset bilateral OA and nystagmus; hom for frameshift variant c.349_352dup p.(Ala118Glufs*45) in NSUN3 (both parents het and unaffected sib het).

Jurkute et al. 2025, PMID: 40465263: 5 families (8 affected individuals) with biallelic variants in NSUN3 – phenotype from mild isolated OA to severe multisystem disease (“almost all” with OA).

NSUN3 is associated with AR Combined oxidative phosphorylation deficiency 48, OMIM:619012 (OMIM accessed 27th May 2026).
Created: 27 May 2026, 9:57 a.m. | Last Modified: 27 May 2026, 9:57 a.m.
Panel Version: 6.28

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Combined oxidative phosphorylation deficiency 48, OMIM:619012

Publications

Neringa Jurkute (MD)

Green List (high evidence)

PMID: 40465263
Biallelic NSUN3 variants were reported to be associated with an early onset severe mitochondrial disorder characterized by combined mitochondrial respiratory chain complex deficiency.
2 individuals from the paper presented with LHON-like phenotype;
5 with attenuated
2 syndromic
Optic atrophy was unifying feature.

PMID: 38790159
Mutations in NSUN3, a Mitochondrial Methyl Transferase Gene, Cause Inherited Optic Neuropathy
Reports early onset optic neuropathy

A follow up par
Sources: Literature, Research
Created: 27 Nov 2025, 8:59 p.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
optic neuropathy; optic atrophy; LHON; LHON-like

Publications

Mode of pathogenicity
Other

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Combined oxidative phosphorylation deficiency 48, OMIM:619012
Tags
Q2_26_promote_green Q2_26_NHS_review
OMIM
617491
Clinvar variants
Variants in NSUN3
Penetrance
None
Publications
Mode of Pathogenicity
Other
Panels with this gene

History Filter Activity

27 May 2026, Gel status: 2

Set Phenotypes

Ida Ertmanska (Genomics England Curator)

Phenotypes for gene: NSUN3 were changed from optic neuropathy; optic atrophy; LHON; LHON-like to Combined oxidative phosphorylation deficiency 48, OMIM:619012

27 May 2026, Gel status: 2

Set publications

Ida Ertmanska (Genomics England Curator)

Publications for gene: NSUN3 were set to PMID: 38790159; PMID: 40465263

27 May 2026, Gel status: 2

Entity classified by Genomics England curator

Ida Ertmanska (Genomics England Curator)

Gene: nsun3 has been classified as Amber List (Moderate Evidence).

27 May 2026, Gel status: 0

Added Tag, Added Tag

Ida Ertmanska (Genomics England Curator)

Tag Q2_26_promote_green tag was added to gene: NSUN3. Tag Q2_26_NHS_review tag was added to gene: NSUN3.

27 Nov 2025, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set mode of pathogenicity

Neringa Jurkute (MD)

gene: NSUN3 was added gene: NSUN3 was added to Optic neuropathy. Sources: Literature,Research Mode of inheritance for gene: NSUN3 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: NSUN3 were set to PMID: 38790159; PMID: 40465263 Phenotypes for gene: NSUN3 were set to optic neuropathy; optic atrophy; LHON; LHON-like Mode of pathogenicity for gene: NSUN3 was set to Other Review for gene: NSUN3 was set to GREEN