Bilateral congenital or childhood onset cataracts
Gene: ABHD12EnsemblGeneIds (GRCh38): ENSG00000100997
EnsemblGeneIds (GRCh37): ENSG00000100997
OMIM: 613599, Gene2Phenotype
ABHD12 is in 15 panels
4 reviews
Ivone Leong (Genomics England Curator)
The rating of this gene has been updated following NHS Genomic Medicine Service approval.Created: 8 Mar 2022, 9:09 a.m. | Last Modified: 8 Mar 2022, 9:09 a.m.
Panel Version: 2.98
Comment on list classification: This gene is associated with a relevant phenotype in OMIM and Gene2Phenotype. There is enough evidence to support a gene-disease association; however, the GMS specialist group should review whether this gene should be included in the panel.Created: 16 Dec 2020, 2:32 p.m. | Last Modified: 16 Dec 2020, 2:32 p.m.
Panel Version: 2.45
Zornitza Stark (Australian Genomics)
Two siblings each from two families with homozygous nonsense and PHARC syndrome and early onset cataract, and a complex homozygous nonsense variant in an adult with early onset cataract have been reported recently in addition to original variants described in 11 families.Created: 7 Jul 2020, 5:41 a.m. | Last Modified: 7 Jul 2020, 5:41 a.m.
Panel Version: 2.6
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract, MIM# 612674
Publications
Variants in this GENE are reported as part of current diagnostic practice
Sarah Waller (Manchester Centre for Genomic Medicine)
Lens opacities only occur in some, primarily older patients. Mutations described in 11 families from 4 different countries (Fiskerstrand et al (2010) Am j Hum Genet 87:410-417)Created: 2 Jun 2016, 1:20 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Polyneuropathy, Hearing Loss, Ataxia, Retinitis Pigmentosa andCataract (PHARC); Polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract, 612674
Variants in this GENE are reported as part of current diagnostic practice
Ellen McDonagh (Genomics England Curator)
Comment when marking as ready: From expert review, does not seem to be compelling evidence to make this gene green on this panel.Created: 2 Jun 2016, 1:23 p.m.
Is not found in G2P with association with a phenotype. Associated with Polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract in OMIM.Created: 25 Apr 2016, 8:54 a.m.
Not on the Manchester congenital cataracts panel.Created: 22 Apr 2016, 4:44 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Radboud University Medical Center, Nijmegen
- Illumina TruGenome Clinical Sequencing Services
- Phenotypes
-
- Polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract, OMIM:612674
- PHARC syndrome, MONDO:0012984
- OMIM
- 613599
- Clinvar variants
- Variants in ABHD12
- Penetrance
- Complete
- Publications
- Panels with this gene
-
- Hereditary neuropathy
- Intellectual disability
- Adult onset neurodegenerative disorder
- Bilateral congenital or childhood onset cataracts
- Retinal disorders
- Likely inborn error of metabolism
- Hereditary ataxia with onset in adulthood
- Ataxia and cerebellar anomalies - narrow panel
- Structural eye disease
- Monogenic hearing loss
- Hereditary ataxia
- Hereditary neuropathy or pain disorder
- Glaucoma (developmental)
- Undiagnosed metabolic disorders
- Childhood onset dystonia, chorea or related movement disorder
History Filter Activity
Removed Tag
Ivone Leong (Genomics England Curator)Tag for-review was removed from gene: ABHD12.
Added New Source, Status Update
Ivone Leong (Genomics England Curator)Source Expert Review Green was added to ABHD12. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)
Entity classified by Genomics England curator
Ivone Leong (Genomics England Curator)Gene: abhd12 has been classified as Amber List (Moderate Evidence).
Added Tag
Ivone Leong (Genomics England Curator)Tag for-review tag was added to gene: ABHD12.
Set publications
Ivone Leong (Genomics England Curator)Publications for gene: ABHD12 were set to
Set Phenotypes
Ivone Leong (Genomics England Curator)Phenotypes for gene: ABHD12 were changed from Polyneuropathy, Hearing Loss, Ataxia, Retinitis Pigmentosa and Cataract (PHARC); Polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract, 612674 to Polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract, OMIM:612674; PHARC syndrome, MONDO:0012984
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Set Phenotypes
Ellen McDonagh (Genomics England Curator)Phenotypes for ABHD12 were set to Polyneuropathy, Hearing Loss, Ataxia, Retinitis Pigmentosa and Cataract (PHARC); Polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract, 612674
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Added New Source
GEL ()ABHD12 was added to Cataractspanel. Sources: Radboud University Medical Center, Nijmegen
Added New Source
GEL ()ABHD12 was added to Cataractspanel. Sources: Illumina TruGenome Clinical Sequencing Services