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Retinal disorders

Gene: CLEC3B

Green List (high evidence)

CLEC3B (C-type lectin domain family 3 member B)
EnsemblGeneIds (GRCh38): ENSG00000163815
EnsemblGeneIds (GRCh37): ENSG00000163815
OMIM: 187520, Gene2Phenotype
CLEC3B is in 1 panel

2 reviews

Achchuthan Shanmugasundram (Genomics England Curator)

Green List (high evidence)

The rating of this gene has been updated to green following NHS Genomic Medicine Service approval.
Created: 24 Feb 2025, 5:49 p.m. | Last Modified: 24 Feb 2025, 5:49 p.m.
Panel Version: 7.8
Comment on list classification: Although the same variant was identified in all five reported families from the same village, this variant recapitulated human phenotypes in mouse model. Hence, this gene can be associated with green rating in the next GMS update.
Created: 5 Oct 2024, 5:53 p.m. | Last Modified: 5 Oct 2024, 5:53 p.m.
Panel Version: 6.22
As reviewed by Dmitrijs Rots, PMID:35331648 reported the identification of the same heterozygous variant (c.539C-A/ p.Ala180Asp) in CLEC3B gene in 12 individuals from five multigenerational Japanese families from the same village presenting with maculoretinopathy.

Mice that received subretinal injections with the CLEC3B variant displayed multiple subretinal hyperreflective deposits, reduced retinal thickness, and decreased electroretinographic responses. Moreover, the optokinetic tracking response indicated that spatial frequency was significantly lower (P < .05), implying impaired visual function in these mice.

This gene has been associated with relevant phenotype in OMIM (MIM #619977), but not yet in Gene2Phenotype.
Created: 5 Oct 2024, 5:46 p.m. | Last Modified: 5 Oct 2024, 5:46 p.m.
Panel Version: 6.19

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
Macular dystrophy, retinal, 4, OMIM:619977

Publications

Dmitrijs Rots (Children's Clinical University Hospital)

Green List (high evidence)

The study described: "5 multigenerational families diagnosed with autosomal dominant maculoretinopathy were found to carry a pathogenic variant in a new gene, CLEC3B, which encodes tetranectin, a plasminogen kringle-4 binding protein. Consistent with the disease phenotypes of patients, mice that received subretinal injections with the CLEC3B variant displayed multiple subretinal hyperreflective deposits, reduced retinal thickness, and decreased electroretinographic responses. Moreover, the optokinetic tracking response indicated that spatial frequency was significantly lower (P < .05), implying impaired visual function in these mice."
Sources: Literature
Created: 27 Jun 2024, 12:31 p.m.

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
Macular dystrophy, retinal, 4

Publications

Details

Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Macular dystrophy, retinal, 4, OMIM:619977
OMIM
187520
Clinvar variants
Variants in CLEC3B
Penetrance
None
Publications
Panels with this gene

History Filter Activity

24 Feb 2025, Gel status: 3

Removed Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q3_24_promote_green was removed from gene: CLEC3B.

24 Feb 2025, Gel status: 3

Added New Source, Added New Source, Status Update

Achchuthan Shanmugasundram (Genomics England Curator)

Source NHS GMS was added to CLEC3B. Source Expert Review Green was added to CLEC3B. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

5 Oct 2024, Gel status: 2

Entity classified by Genomics England curator

Achchuthan Shanmugasundram (Genomics England Curator)

Gene: clec3b has been classified as Amber List (Moderate Evidence).

5 Oct 2024, Gel status: 0

Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

Phenotypes for gene: CLEC3B were changed from Macular dystrophy, retinal, 4 to Macular dystrophy, retinal, 4, OMIM:619977

5 Oct 2024, Gel status: 0

Set publications

Achchuthan Shanmugasundram (Genomics England Curator)

Publications for gene: CLEC3B were set to PMID: 35331648

5 Oct 2024, Gel status: 0

Added Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q3_24_promote_green tag was added to gene: CLEC3B.

27 Jun 2024, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Dmitrijs Rots (Children's Clinical University Hospital)

gene: CLEC3B was added gene: CLEC3B was added to Retinal disorders. Sources: Literature Mode of inheritance for gene: CLEC3B was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: CLEC3B were set to PMID: 35331648 Phenotypes for gene: CLEC3B were set to Macular dystrophy, retinal, 4 Review for gene: CLEC3B was set to GREEN