Limb disorders
Gene: ALMS1EnsemblGeneIds (GRCh38): ENSG00000116127
EnsemblGeneIds (GRCh37): ENSG00000116127
OMIM: 606844, Gene2Phenotype
ALMS1 is in 24 panels
1 review
Eleanor Williams (Genomics England Curator)
Comment on list classification: Gene made grey as it is green on the Rare multisystem ciliopathy disorders panel (v1.78) and the ciliopathy panel will be applied if a patient is suspected of having a ciliopathy, or the possibility of a ciliopathy cannot be excluded.Created: 2 Dec 2018, 10:37 p.m.
Comment when marking as ready: Rated red after review of literatureCreated: 16 Oct 2018, 3:04 p.m.
Comment on list classification: Rating red as only one report of a variant in this gene being associated with a polydactyly phenotype.Created: 26 Sep 2018, 9:09 p.m.
ALMS1 is associated with Alstrom syndrome in OMIM and also has a confirmed association in Gene2Phenotype. In OMIM they note that patients with this syndrome show NO polydactyly.
A literature search of PubMed found only one publication reporting a family (BBS-A1) with polydactyly and a variant in ALMS1 (Sathya Priya et al 2015, PMID: 24400638). The patient was diagnosed with Bardet-Biedl syndrome. The same publication reports another family (BBS-C1) again with a variant found in ALMS1 (p.R3629X) and Bardet-Biedl syndrome but no polydactyly was observed.Created: 26 Sep 2018, 9:07 p.m.
Publications
Details
- Sources
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- Expert Review Removed
- Victorian Clinical Genetics Services
- Phenotypes
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- Polydactyly
- Tags
- OMIM
- 606844
- Clinvar variants
- Variants in ALMS1
- Penetrance
- None
- Publications
- Panels with this gene
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- Renal ciliopathies
- Ophthalmological ciliopathies
- Monogenic hearing loss
- Childhood onset dystonia, chorea or related movement disorder
- Bardet Biedl syndrome
- Insulin resistance (including lipodystrophy)
- Limb disorders
- Dilated Cardiomyopathy and conduction defects
- Structural eye disease
- Alstrom syndrome
- Severe early-onset obesity
- Diabetes with additional phenotypes suggestive of a monogenic aetiology
- Retinal disorders
- Paediatric or syndromic cardiomyopathy
- Unexplained kidney failure in young people
- Monogenic diabetes
- Intellectual disability
- Ductal plate malformation
- Proteinuric renal disease
- Lipodystrophy - childhood onset
- Fetal anomalies
- DDG2P
- Glaucoma (developmental)
- Rare multisystem ciliopathy disorders
History Filter Activity
Added Tag
Arina Puzriakova (Genomics England Curator)Tag curated_removed tag was added to gene: ALMS1.
Panel promoted to version 1.0
Eleanor Williams (Genomics England Curator)Eleanor Williams: ALMS1 is associated with Alstr
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: alms1 has been removed from the panel.
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source Expert Review Removed was added to ALMS1. Rating Changed from Red List (low evidence) to No List (delete)
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: alms1 has been classified as Red List (Low Evidence).
Set publications
Eleanor Williams (Genomics England Curator)Publications for gene: ALMS1 were set to
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: alms1 has been classified as Red List (Low Evidence).
Added New Source
Ellen McDonagh (Genomics England Curator)ALMS1 was added to Limb disorders panel. Sources: Victorian Clinical Genetics Services
Created
Ellen McDonagh (Genomics England Curator)ALMS1 was created by Ellen McDonagh