Limb disorders
Gene: ARL6EnsemblGeneIds (GRCh38): ENSG00000113966
EnsemblGeneIds (GRCh37): ENSG00000113966
OMIM: 608845, Gene2Phenotype
ARL6 is in 20 panels
1 review
Eleanor Williams (Genomics England Curator)
Comment on list classification: The Bardet-Biedl syndrome genes are being added back to this panel to avoid missing a potential diagnosis in the Genomic Medicine Service.Created: 25 Nov 2019, 5:12 p.m. | Last Modified: 25 Nov 2019, 5:12 p.m.
Panel Version: 1.66
Comment on list classification: Gene made grey as it is green on the Rare multisystem ciliopathy disorders panel (v1.78) and the ciliopathy panel will be applied if a patient is suspected of having a ciliopathy, or the possibility of a ciliopathy cannot be excluded.Created: 2 Dec 2018, 10:37 p.m.
Comment when marking as ready: Sufficient evidence to rate green.Created: 16 Oct 2018, 3:10 p.m.
Note: also green on Rare multisystem ciliopathy disorders panelCreated: 16 Oct 2018, 3:07 p.m.
Comment on list classification: Rated green as variants in the ARL6 gene is associated with Bardet-Biedl syndrome 3 in more than cases/families.Created: 3 Oct 2018, 4:03 p.m.
ARL6 (also known as BBS3) is associated with Bardet-Biedl syndrome 3 in OMIM and has a confirmed association in Gene2Phenotype. Bardet-Biedl syndrome 3 is characterized by retinal dystrophy, polydactyly, renal structural abnormalities, and history of obesity.
Chiang et al 2004 (PMID: 15258860) report sequencing of the ARL6 gene in a large Israeli-Bedouin family with 13 affected individuals. ARL6 contains a homozygous stop mutation that segregates completely with the disease in the Bedouin kindred. All patients showed polydactyly (Sheffield et al. 1994 (PMID: 7987310).
Fan et al. (2004) (PMID: 15314642) found mutations in the ARL6 gene that segregated with BBS3 in 4 independent families.
Safieh et al. (2010) (PMID: 19858128) found 3 mutations in the BBS3 gene (ARL6) in consanguineous Saudi Arabian families with BBS3.
Forsythe & Beales 2013 report that the presence of polydactyly in individuals with Bardet-Biedl syndrome from all causes ranges from 68% to 81%.Created: 3 Oct 2018, 12:36 p.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Victorian Clinical Genetics Services
- Phenotypes
-
- Polydactyly
- Bardet-Biedl syndrome 3 600151
- OMIM
- 608845
- Clinvar variants
- Variants in ARL6
- Penetrance
- None
- Publications
- Panels with this gene
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- Ductal plate malformation
- Skeletal ciliopathies
- Cystic kidney disease
- Bardet Biedl syndrome
- Structural eye disease
- Skeletal dysplasia
- Fetal anomalies
- Glaucoma (developmental)
- Thoracic dystrophies
- Primary ciliary disorders
- Rare multisystem ciliopathy disorders
- Intellectual disability
- Childhood onset dystonia, chorea or related movement disorder
- Renal ciliopathies
- Limb disorders
- Ophthalmological ciliopathies
- Unexplained kidney failure in young people
- Retinal disorders
- DDG2P
- Severe early-onset obesity
History Filter Activity
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: arl6 has been classified as Green List (High Evidence).
Panel promoted to version 1.0
Eleanor Williams (Genomics England Curator)Eleanor Williams: ARL6 (also known as BBS3) is a
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: arl6 has been removed from the panel.
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source Expert Review Removed was added to ARL6. Rating Changed from Green List (high evidence) to No List (delete)
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: arl6 has been classified as Green List (High Evidence).
Set Phenotypes
Eleanor Williams (Genomics England Curator)Phenotypes for gene: ARL6 were changed from Polydactyly to Polydactyly; Bardet-Biedl syndrome 3 600151
Set publications
Eleanor Williams (Genomics England Curator)Publications for gene: ARL6 were set to
Set mode of inheritance
Eleanor Williams (Genomics England Curator)Mode of inheritance for gene: ARL6 was changed from to BIALLELIC, autosomal or pseudoautosomal
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: arl6 has been classified as Green List (High Evidence).
Added New Source
Ellen McDonagh (Genomics England Curator)ARL6 was added to Limb disorders panel. Sources: Victorian Clinical Genetics Services
Created
Ellen McDonagh (Genomics England Curator)ARL6 was created by Ellen McDonagh