Neonatal cholestasis
Gene: NPC2EnsemblGeneIds (GRCh38): ENSG00000119655
EnsemblGeneIds (GRCh37): ENSG00000119655
OMIM: 601015, Gene2Phenotype
NPC2 is in 17 panels
3 reviews
Eleanor Williams (Genomics England Curator)
Comment when marking as ready: Sufficient evidence to rate as green.Created: 25 Jul 2018, 10:25 a.m.
Comment on list classification: More than 3 unrelated cases with plausible disease-causing mutations.Created: 25 Jul 2018, 10:24 a.m.
Comment on phenotypes: Added MIM number to Niemann-Pick disease type C2Created: 25 Jul 2018, 10:22 a.m.
Comment on publications: Added publications related to cases.Created: 25 Jul 2018, 10:22 a.m.
In OMIM and Gene2phenotype NCP2 (also known as HE1) is associated with Niemann-pick disease, type C2. OMIM report that Naureckiene et al. (2000) (PMID: 11125141) identified homozygous mutations in the HE1 gene in 2 patients with Niemann-Pick disease type C. Park et al. (2003) (PMID: 12955717) identified 7 different mutations in the NPC2 gene as the basis of Niemann-Pick disease type C and Verot et al. (2007) (PMID: 17470133) identified 5 different mutations in the NPC2 gene in 6 unrelated patients with NPC2. Millat et al. (2001) (PMID: 11567215) reported the first comprehensive study of 8 unrelated families with NPC2 and among these patients 5 different mutations were identified, all with a severe impact on the protein.Created: 25 Jul 2018, 10:21 a.m.
Jane Hartley (Birmingham Women and Children's Hospital)
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Cholestasis; Niemann Pick C
Variants in this GENE are reported as part of current diagnostic practice
Thalia Antoniadi (West Midlands Regional Genetics Laboratory)
All types of variants reported;
Only 2 carriers identified in 205 patients tested (MLPA has also been performed)Created: 4 Jun 2018, 1:14 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Niemann-Pick disease
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Victorian Clinical Genetics Services
- UKGTN
- Emory Genetics Laboratory
- Phenotypes
-
- Neonatal and Adult Cholestasis
- Niemann-Pick disease type C2, 607625
- OMIM
- 601015
- Clinvar variants
- Variants in NPC2
- Penetrance
- None
- Publications
- Panels with this gene
-
- Cholestasis
- Undiagnosed metabolic disorders
- Intellectual disability
- Childhood onset dystonia, chorea or related movement disorder
- DDG2P
- Niemann Pick disease type C
- Hyperammonaemia
- Adult onset neurodegenerative disorder
- Ataxia and cerebellar anomalies - narrow panel
- Likely inborn error of metabolism
- Hereditary ataxia with onset in adulthood
- Early onset dystonia
- Adult onset dystonia, chorea or related movement disorder
- Hereditary ataxia
- Neonatal cholestasis
- Fetal anomalies
- Lysosomal storage disorder
History Filter Activity
Panel promoted to version 1.0
Sarah Leigh (Genomics England Curator)This panel has been subjected to extensive internal and external review.
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for gene: NPC2 were set to Neonatal and Adult Cholestasis; Niemann-Pick disease type C2, 607625
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: npc2 has been classified as Green List (High Evidence).
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: npc2 has been classified as Green List (High Evidence).
Set Phenotypes
Eleanor Williams (Genomics England Curator)Phenotypes for gene: NPC2 were set to Neonatal and Adult Cholestasis; Niemann-Pick disease type C2 607625
Set publications
Eleanor Williams (Genomics England Curator)Publications for gene: NPC2 were set to 11125141; 12955717; 17470133; 11567215
Added New Source
Ellen McDonagh (Genomics England Curator)Victorian Clinical Genetics Services was added to NPC2. Panel: Cholestasis
Added New Source, Set mode of inheritance, Set penetrance
Ellen McDonagh (Genomics England Curator)UKGTN was added to NPC2. Panel: Cholestasis Model of inheritance for gene NPC2 was set to BIALLELIC, autosomal or pseudoautosomal Phenotypes for gene NPC2 were set to Neonatal and Adult Cholestasis, Niemann-Pick disease type C2
Added New Source
Ellen McDonagh (Genomics England Curator)NPC2 was added to Cholestasis panel. Sources: Emory Genetics Laboratory
Created
Ellen McDonagh (Genomics England Curator)NPC2 was created by Ellen McDonagh