Parkinson Disease and Complex Parkinsonism
Gene: HTRA2EnsemblGeneIds (GRCh38): ENSG00000115317
EnsemblGeneIds (GRCh37): ENSG00000115317
OMIM: 606441, Gene2Phenotype
HTRA2 is in 18 panels
3 reviews
Arianna Tucci (Department of Molecular Neuroscience, UCL Institute of Neurology, Queen Square)
One variant, p.G399S initially found using a candidate gene approach in 4 sporadic PD patients; the polymorphism A141S was found at higher frequencies in patients with PD (15961413). In a large case control screen neither of the variants were found to be associated with PD, and they were present in neurologically normal controls (18364387). 18401856 screened 66 Belgian PD patients and 273 control individuals and found one novel mutation in one PD (p.Arg404Trp) and six variants at the 5 and 3 regions in PD. PMID: 18790661 sequenced HTRA2 in 95 probands with apparent autosomal dominant inheritance of Parkinson's disease did not identify any pathogenic mutations. PMID 20036034 performed a large genetic association study (6378 cases and 8880 controls) to evaluate the contribution of Omi/HtrA2 to Parkinson's disease and failed to identify an association of Omi/HtrA2 variants with PD. 21701785 screened a cohort of sporadic PD patients in the taiwanse population and found a missense variant, Pro143Ala was absent in total 850 control subjects. Functional studies suggested a mitochondrial dysfunction in cells carrying the variant. 24337630 screened a cohort of PD (Taiwanese) and found a novel heterozygous mutation, R36W, in one early-onset and two late-onset PD patients, which was absent in 606 normal controls. Functional studies suggested a mitochondrial dysfunction in cells carrying the variant. The p.G399S (mono and bi-allelic) was lately found in a large Turkish family with essential tremor, with some affected developing also parkinsonism (PMID: 25422467), the p.G399S was then genotyped in 204 Parkinson disease, 103 essential tremor patients and in cervical dystonia patients and in controls from Norway and it was not found to be associated with PD or tremor, and it was present in neurologically normal controls. (PMID: 25825781). Overall, these results do not support a major role of HTRA2 in PD.Created: 14 Dec 2016, 5:27 p.m.
Rebecca Foulger (Genomics England curator)
In PMID:15961413, 4 of 518 patients with Parkinson's disease were found a 1195G-A transition (G399S) in exon 7 of the HTRA2 gene. However PMID 18364387 found a similar frequency of the G399S allele among 644 patients and 828 controls. Similarly, PMID:18401856 cast doubts on the pathogenicitiy of the A141S variant identified by PMID:15961413 because of a similar frequencey amongst controls and patients.
Review PMID:23462481 suggests that HTRA2 is a gene with mutations originally thought to cause Parkinson's, but since unconfirmed.
Created: 10 Nov 2016, 4:41 p.m.
Ellen McDonagh (Genomics England Curator)
Comment on list classification: Discussed with Arianna. Some controversy around this gene, and mixed reports. Should remain red.Created: 8 Dec 2016, 3:50 p.m.
Comment on list classification: Discussed with Arianna. Some controversy around this gene, and mixed reports. Should remain red.Created: 8 Dec 2016, 3:50 p.m.
Comment on list classification: Due to uncertainty regarding the pathogenicity of variants within this gene to cause Parkinson's disease, I have demoted this from amber to red.Created: 15 Nov 2016, 9:54 a.m.
This gene is not mentioned in the UCLH National Hospital for Neurology and Neurosurgery & Institute of Neurology (NHNN) Neurogenetics genetic testing manual.Created: 10 Jun 2016, 12:18 p.m.
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Expert Review Red
- Illumina TruGenome Clinical Sequencing Services
- Radboud University Medical Center, Nijmegen
- Phenotypes
-
- Parkinson disease 13, 610297
- Parkinson Disease, Dominant
- OMIM
- 606441
- Clinvar variants
- Variants in HTRA2
- Penetrance
- Complete
- Publications
- Panels with this gene
-
- Childhood onset dystonia, chorea or related movement disorder
- Cytopenia - NOT Fanconi anaemia
- Adult onset dystonia, chorea or related movement disorder
- Primary immunodeficiency or monogenic inflammatory bowel disease
- Mitochondrial disorders
- Early onset or syndromic epilepsy
- DDG2P
- Intellectual disability
- COVID-19 research
- Adult onset neurodegenerative disorder
- Bilateral congenital or childhood onset cataracts
- Likely inborn error of metabolism
- Parkinson Disease and Complex Parkinsonism
- Early onset dystonia
- Possible mitochondrial disorder - nuclear genes
- Congenital myopathy
- Monogenic hearing loss
- Undiagnosed metabolic disorders
History Filter Activity
panel promoted to version 1
Ellen McDonagh (Genomics England Curator)19th Dec 2016: panel revised according to expert review and further curation.
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Set publications
Ellen McDonagh (Genomics England Curator)Publications for HTRA2 were set to 15961413;18364387;18401856;15961413;23462481
Created
Ellen McDonagh (Genomics England Curator)HTRA2 was created by ellenmcdonagh
Added New Source
Ellen McDonagh (Genomics England Curator)HTRA2 was added to Parkinson Disease and Complex Parkinsonismpanel. Sources: Radboud University Medical Center, Nijmegen,Illumina TruGenome Clinical Sequencing Services