Intellectual disability update Jan 2018

Gene: MT-ND4

Red List (low evidence)

MT-ND4 (mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4)
EnsemblGeneIds (GRCh38): ENSG00000198886
EnsemblGeneIds (GRCh37): ENSG00000198886
OMIM: 516003, Gene2Phenotype
MT-ND4 is in 8 panels

2 reviews

Helen Brittain (Genomics England Curator)

Red List (low evidence)

Comment when marking as ready: No clear evidence linking mitochondrial point mutations in this gene, with causation of phenotypes appropriate for inclusion on this panel.
Created: 5 Mar 2018, 1:49 p.m.
12707444 reports a 67 year old man with a later onset of features than would be appropriate for this panel. The variant is the same as a reported LHON variant, therefore there is a risk of incidental findings if included. 29340697 demonstrates links between mitochondrial dysfunction (as measured by estimating mitochondrial copy number through assessing the copy number of mitochondrial genes MT-ND4 & MT-ND1) and a cohort with ID/Autism. There is no clear evidence for pathogenic variants in MT-ND4 and causation of ID on the current evidence. Considered red at present.
Created: 5 Mar 2018, 1:48 p.m.

Sarah Leigh (Genomics England Curator)

Associated with phenotype in OMIM, not in G2P. At least 1 variant reported in a 67 year old man with Mitochondrial complex I deficiency and cognitive deficits (PMID 12707444). Copy number losses reported in autism spectrum disorder; intellectual disability cases (PMID 29340697).
Created: 28 Feb 2018, 12:23 p.m.

Details

Mode of Inheritance
MITOCHONDRIAL
Sources
  • Expert Review Red
  • BRIDGE study SPEED NEURO Tier1 Gene
Phenotypes
  • Mitochondrial complex I deficiency
  • autism spectrum disorder
  • intellectual disability
Tags
cnv
OMIM
516003
Clinvar variants
Variants in MT-ND4
Penetrance
None
Publications
Panels with this gene

History Filter Activity

5 Mar 2018, Gel status: 1

Gene classified by Genomics England curator

Helen Brittain (Genomics England Curator)

This gene has been classified as Red List (Low Evidence).

5 Mar 2018, Gel status: 1

Gene classified by Genomics England curator

Helen Brittain (Genomics England Curator)

This gene has been classified as Red List (Low Evidence).

28 Feb 2018, Gel status: 2

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for MT-ND4 were set to Mitochondrial complex I deficiency; autism spectrum disorder; intellectual disability

28 Feb 2018, Gel status: 2

Set publications

Sarah Leigh (Genomics England Curator)

Publications for MT-ND4 were set to 29340697; 12707444

28 Feb 2018, Gel status: 2

Set publications

Sarah Leigh (Genomics England Curator)

Publications for MT-ND4 were set to 29340697

28 Feb 2018, Gel status: 2

Set mode of inheritance

Sarah Leigh (Genomics England Curator)

Mode of inheritance for MT-ND4 was changed from to MITOCHONDRIAL

18 Dec 2017, Gel status: 2

Added New Source

Ellen McDonagh (Genomics England Curator)

MT-ND4 was added to Intellectual disability update Jan 2018 panel. Sources: BRIDGE study SPEED NEURO Tier1 Gene,Expert Review Amber

18 Dec 2017, Gel status: 2

Created

Ellen McDonagh (Genomics England Curator)

MT-ND4 was created by Ellen McDonagh