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Hereditary neuropathy

Gene: SMN1

Green List (high evidence)
SMN1 (survival of motor neuron 1, telomeric)
EnsemblGeneIds (GRCh38): ENSG00000172062
EnsemblGeneIds (GRCh37): ENSG00000172062
OMIM: 600354, Gene2Phenotype
SMN1 is in 7 panels

7 reviews

Eleanor Williams (Genomics England Curator)

Phenotype refinement:

PMID: 32644125 - Hensel et al 2020 - 42 SMA children (not genotyped) compared to age-matched controls had signficantly smaller anterior height (cranio-caudal extent) as well as the depth of the upper endplate. Bone mineral density were significantly lower in SMA children compared to age-matched healthy controls. This growth defect but not the mineralization defect was evident in pre-symptomatic SMA mice.

PMID: 32644120 - Motyl et al 2020 - mouse model of Spinal muscular atrophy shows that presymptomatic SMA embryos were significantly smaller than littermate controls, indicative of general developmental delay. In particular, cardiac ventricles were smaller in SMA hearts, but not liver and brain. Significant molecular perturbations in proteomic profiles were observed in all organs examined, highlighting tissue-specific prenatal molecular phenotypes in SMA.
Created: 6 Oct 2020, 11:38 a.m. | Last Modified: 6 Oct 2020, 11:38 a.m.
Panel Version: 1.376

Phenotypes
Spinal muscular atrophy

Publications

Created: 6 Oct 2020, 11:38 a.m.
Last Modified: 6 Oct 2020, 11:38 a.m.
Panel version: 1.376

Louise Daugherty (Genomics England Curator)

I don't know

Rating and review submitted on behalf of James Polke (Neurogenetics Laboratory,Institute of Neurology, London), on behalf of London North GLH for GMS Neurology specialist test group.
Created: 9 May 2019, 5 p.m.
Created: 29 Apr 2019, 9:26 a.m.

Panel version: 1.80

James Polke (Neurogenetics Laboratory, Institute of Neurology, London)

Green List (high evidence)

Can present as late onset motor neuropathy. Sequencing and copy number analysis confounded by SMN2
Created: 29 Apr 2019, 9:20 a.m.
Created: 29 Apr 2019, 9:20 a.m.

Panel version: 1.52

Ellen McDonagh (Genomics England Curator)

Added the tag ‘gene-therapy-trial’ as this gene-disease is within the Gene Therapy Panel available here: https://panelapp.genomicsengland.co.uk/panels/412
Created: 14 May 2018, 9:54 a.m.
Comment on list classification: Promoted from red to green due to agreement from 3 reviewers. Missense and deletions are reported in OMIM with an association with spinal muscular atrophy.
Created: 5 May 2016, 10:24 a.m.
Created: 5 May 2016, 10:24 a.m.

Panel version: 1.20

Rita Horvath (Institute of Genetic Medicine, Newcastle University)

Green List (high evidence)

most common cause of SMA
Created: 9 Dec 2015, 4:49 p.m.

Variants in this GENE are reported as part of current diagnostic practice

Created: 9 Dec 2015, 4:49 p.m.

Panel version: 0

Alexander Rossor (UCL Institute of Neurology)

Green List (high evidence)

Cause of SMA but only exonic deletions
Created: 9 Dec 2015, 8:50 a.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Created: 9 Dec 2015, 8:50 a.m.

Panel version: 0

Mary Reilly (Institute of Neurology)

Green List (high evidence)

Cause of SMA but only exonic deletions
Created: 8 Dec 2015, 3:06 p.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Created: 8 Dec 2015, 3:06 p.m.

Panel version: 0

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • NHS GMS
  • London North GLH
  • Expert Review Green
  • Expert list
Phenotypes
  • Spinal muscular atrophy-3, OMIM:253400
  • Spinal muscular atrophy-4, OMIM:271150
  • Spinal muscular atrophy-2, OMIM:253550
  • Spinal muscular atrophy-1, OMIM:253300
Tags
gene-therapy-trial
OMIM
600354
Clinvar variants
Variants in SMN1
Penetrance
Complete
Publications
Panels with this gene

History Filter Activity

28 Feb 2023, Gel status: 3

Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

Phenotypes for gene: SMN1 were changed from Spinal muscular atrophy to Spinal muscular atrophy-3, OMIM:253400; Spinal muscular atrophy-4, OMIM:271150; Spinal muscular atrophy-2, OMIM:253550; Spinal muscular atrophy-1, OMIM:253300

6 Oct 2020, Gel status: 3

Set publications

Eleanor Williams (Genomics England Curator)

Publications for gene: SMN1 were set to

29 Apr 2019, Gel status: 4

Added New Source

Louise Daugherty (Genomics England Curator)

Source NHS GMS was added to SMN1.

29 Apr 2019, Gel status: 3

Added New Source, Status Update

Louise Daugherty (Genomics England Curator)

Source London North GLH was added to SMN1. Rating Changed from Green List (high evidence) to Green List (high evidence)

8 Jul 2016, Gel status: 4

Gene classified by Genomics England curator

Richard Scott (Genomics England Curator)

This gene has been classified as Green List (High Evidence).

5 May 2016, Gel status: 4

Set Phenotypes

Ellen McDonagh (Genomics England Curator)

Phenotypes for SMN1 were set to Spinal muscular atrophy

5 May 2016, Gel status: 4

Gene classified by Genomics England curator

Ellen McDonagh (Genomics England Curator)

This gene has been classified as Green List (High Evidence).

5 May 2016, Gel status: 0

Set Mode of Inheritance

Ellen McDonagh (Genomics England Curator)

Mode of inheritance for SMN1 was changed to BIALLELIC, autosomal or pseudoautosomal

20 Jul 2015, Gel status: 0

Added New Source

Ellen McDonagh (Genomics England Curator)

SMN1 was added to Charcot-Marie-Tooth diseasepanel. Sources: Expert list