Proteinuric renal disease
Gene: PAX2EnsemblGeneIds (GRCh38): ENSG00000075891
EnsemblGeneIds (GRCh37): ENSG00000075891
OMIM: 167409, Gene2Phenotype
PAX2 is in 17 panels
1 review
Eleanor Williams (Genomics England Curator)
Comment on list classification: > 3 cases where variants in this gene are associated with a relevant phenotypeCreated: 1 Apr 2019, 8:39 p.m.
PAX2 is associated with Glomerulosclerosis, focal segmental, 7 (616002) and Papillorenal syndrome (120330) in OMIM.
OMIM list numerous cases of PAX2 variants in patients with Papillorenal Syndrome/Renal coloboma syndrome and with focal segmental glomerulosclerosis-7.
PMID: 26571382 - Okumura et al 2015 - 26 patients with Renal coloboma syndrome were screened. Patients with CHARGE, COACH and Jouberts syndrome were excluded. Analyzed the sequences of PAX2 and 25 other genes in 26 patients clinically diagnosed with RCS, and 4 optic nerve coloboma only patients as disease-negative controls. Six PAX2 mutations (3 frameshifts, 1 nonsense, 2 missense) in 11 probands; two in family cohorts [n = 5 and n = 2] and in 4 out of 19 patients with sporadic disease, including four novel mutations, were confirmed using Sanger sequencing.Created: 1 Apr 2019, 8:39 p.m.
This gene was part of an initial gene list collated by Elizabeth Watson, North Bristol NHS Trust, February 2019 on behalf of the GMS Renal Specialist Test Group. Gene Symbol submitted: PAX2; Suggested initial gene rating: green; Evidence for inclusion: PMID: 26571382; Other comments: Multiple reports in the literature.Created: 4 Feb 2019, 10:41 a.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Glomerulosclerosis, focal segmental, 7 #616002
Publications
- PMID: 26571382
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Expert Review Green
- NHS GMS
- Phenotypes
-
- Glomerulosclerosis, focal segmental, 7 #616002
- OMIM
- 167409
- Clinvar variants
- Variants in PAX2
- Penetrance
- None
- Publications
- Panels with this gene
-
- Unexplained kidney failure in young people
- DDG2P
- Ocular coloboma
- Intellectual disability
- Adult onset neurodegenerative disorder
- Retinal disorders
- Hereditary ataxia with onset in adulthood
- Ataxia and cerebellar anomalies - narrow panel
- Ductal plate malformation
- Cystic kidney disease
- Structural eye disease
- Monogenic hearing loss
- Hereditary ataxia
- Fetal anomalies
- Proteinuric renal disease
- Anophthalmia or microphthalmia
- CAKUT
History Filter Activity
Set Phenotypes
Eleanor Williams (Genomics England Curator)Phenotypes for gene: PAX2 were changed from to Glomerulosclerosis, focal segmental, 7 #616002
Set publications
Eleanor Williams (Genomics England Curator)Publications for gene: PAX2 were set to
Set mode of inheritance
Eleanor Williams (Genomics England Curator)Mode of inheritance for gene: PAX2 was changed from to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: pax2 has been classified as Green List (High Evidence).
Created, Added New Source, Set mode of inheritance
Eleanor Williams (Genomics England Curator)gene: PAX2 was added gene: PAX2 was added to Proteinuric renal disease. Sources: NHS GMS Mode of inheritance for gene: PAX2 was set to