Monogenic hearing loss
Gene: COL4A6EnsemblGeneIds (GRCh38): ENSG00000197565
EnsemblGeneIds (GRCh37): ENSG00000197565
OMIM: 303631, Gene2Phenotype
COL4A6 is in 4 panels
6 reviews
Eleanor Williams (Genomics England Curator)
The rating of this gene has been updated following NHS Genomic Medicine Service approval.Created: 3 Mar 2022, 1:19 p.m. | Last Modified: 3 Mar 2022, 1:19 p.m.
Panel Version: 2.221
Provisionally associated with ?Deafness, X-linked 6 #300914 (XLR) in OMIM.
Only 1 family reported in PMID: 23714752 - Rost et al 2014 - a Hungarian three-generation family with X-linked nonsyndromic congenital hearing loss with a missense mutation (c.1771G>A, p.Gly591Ser) in COL4A6 in all affected family members. In situ hybridization and immunostaining demonstrated expression of the COL4A6 homologs in the otic vesicle of the zebrafish and in the murine inner ear, supporting its role in normal ear development and function.
Pubmed search didn’t find any other cases.Created: 28 Jan 2020, 10:39 a.m. | Last Modified: 28 Jan 2020, 10:40 a.m.
Panel Version: 2.4
Zornitza Stark (Australian Genomics)
Out of all the papers listed here, only this one describes the association with deafness, based on a single family.Created: 2 Jan 2020, 3:52 a.m. | Last Modified: 2 Jan 2020, 3:52 a.m.
Panel Version: 2.4
Mode of inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Phenotypes
Deafness, X-linked 6, MIM#300914
Publications
Maria Bitner-Glindzicz (UCL)
Ellen McDonagh (Genomics England Curator)
Comment on mode of inheritance: X-linked recessive = biallelic mutations in females.Created: 17 Feb 2016, 12:57 p.m.
Jun Shen (Harvard Medical School)
Inheritance:X-linked recessiveCreated: 9 Feb 2016, 10:05 a.m.
Inheritance:X-linked recessive Inheritance:X-linked recessiveCreated: 7 Feb 2016, 8:55 a.m.
Mode of inheritance
Other
Phenotypes
#300914:?Deafness, X-linked 6[Deafness, sensorineural, bilateralCochlear malformationIncomplete separation of the cochlea from the internal auditory canal]
Publications
Damian Smedley (Genomics England Curator)
Comment on list classification: Good evidence from OMIM and expert reviewCreated: 31 Jan 2016, 8:05 a.m.
Details
- Mode of Inheritance
- X-LINKED: hemizygous mutation in males, biallelic mutations in females
- Sources
-
- Expert Review Amber
- Expert
- Radboud University Medical Center, Nijmegen
- UKGTN
- Phenotypes
-
- Deafness, X-linked 6, OMIM:300914
- OMIM
- 303631
- Clinvar variants
- Variants in COL4A6
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
Removed Tag
Eleanor Williams (Genomics England Curator)Tag for-review was removed from gene: COL4A6.
Set Phenotypes
Eleanor Williams (Genomics England Curator)Phenotypes for gene: COL4A6 were changed from #300914:?Deafness, X-linked 6; diffuse leiomyomatosis with Alport syndrome = contiguous gene with COL4A5; Leiomyomatosis, diffuse, with Alport syndrome, 308940 (4) to Deafness, X-linked 6, OMIM:300914
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source Expert Review Amber was added to COL4A6. Rating Changed from Green List (high evidence) to Amber List (moderate evidence)
Added Tag
Eleanor Williams (Genomics England Curator)Tag for-review tag was added to gene: COL4A6.
Set Phenotypes
Ellen McDonagh (Genomics England Curator)Phenotypes for COL4A6 were set to #300914:?Deafness, X-linked 6; diffuse leiomyomatosis with Alport syndrome = contiguous gene with COL4A5; Leiomyomatosis, diffuse, with Alport syndrome, 308940 (4)
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Mode of inheritance for COL4A6 was changed to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Set publications
Ellen McDonagh (Genomics England Curator)Publications for COL4A6 were set to PMID: 23714752; 7592929; 7711741; 7972123; 8125972; 8175748; 8356449; 8661006; 9463311
Gene classified by Genomics England curator
Damian Smedley (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set Mode of Inheritance
Damian Smedley (Genomics England Curator)Mode of inheritance for COL4A6 was changed to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Gene classified by Genomics England curator
Damian Smedley (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Added New Source
Ellen McDonagh (Genomics England Curator)COL4A6 was added to Congenital hearing impairment (Profound/Severe)panel. Sources: UKGTN,Radboud University Medical Center, Nijmegen,Expert
Added New Source
Ellen McDonagh (Genomics England Curator)COL4A6 was added to Congenital hearing impairment (Profound/Severe)panel. Sources: UKGTN,Radboud University Medical Center, Nijmegen,Expert
Added New Source
Ellen McDonagh (Genomics England Curator)COL4A6 was added to Congenital hearing impairment (Profound/Severe)panel. Sources: UKGTN,Radboud University Medical Center, Nijmegen,Expert