Monogenic hearing loss
Gene: TJP2EnsemblGeneIds (GRCh38): ENSG00000119139
EnsemblGeneIds (GRCh37): ENSG00000119139
OMIM: 607709, Gene2Phenotype
TJP2 is in 3 panels
5 reviews
Eleanor Williams (Genomics England Curator)
After review with the NHS GMS hearing specialist group on 2019-02-13 it was decided to keep this gene red.Created: 27 Feb 2019, 10:35 a.m.
Emma Ashton (Great Ormond Street Hospital)
Kim et al 2014 PMID 24752540 report two heterozygous missense variants in Korean patients with NSHL. Main association for this gene seems to be hypercholanaemia/intrahepatic cholestasis, no association with HL on OMIMCreated: 17 Feb 2019, 4:35 p.m.
Publications
Ellen McDonagh (Genomics England Curator)
Comment on list classification: Both reviewers suggest this gene should be demoted from green to red. Little evidence in OMIM for a confirmed association between variants within this gene and deafness: PMID: 20602916 hypothesized that overexpression of TJP2 may result in progressive hearing loss. PMID: 18616530 reports a mutation in TJP2 in a family with autosomal dominant nonsyndromic hearing loss, but that this variant could not conclusively be shown to be the causative variant.Created: 22 Feb 2016, 6:25 p.m.
Jun Shen (Harvard Medical School)
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
#607748:Hypercholanemia, familial[<omim version=1.0><clinicalSynopsisList>]; #615878:Cholestasis, progressive familial intrahepatic 4[Intrahepatic cholestasisLiver failurePortal hypertensionElongated tight junctions between adjacent hepatocytes and biliary canaliculi seen on biopsy; Hepatocellular carcinoma, childhood onset (reported in 2 patients); Normal or mildly increased serum gamma-glutamyltransferase (GGT)]
Publications
Maria Bitner-Glindzicz (UCL)
very few convincing mutations.
Some functional evidence. Overall not strong evidence.Created: 13 Oct 2015, 8:09 p.m.
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Expert Review Red
- Expert
- Radboud University Medical Center, Nijmegen
- Emory Genetics Laboratory
- UKGTN
- Illumina TruGenome Clinical Sequencing Services
- Phenotypes
-
- hearing loss
- Nonsyndromic Hearing Loss, Dominant
- Cholestasis, progressive familial intrahepatic 4, 615878
- Hypercholanemia, familial, 607748
- OMIM
- 607709
- Clinvar variants
- Variants in TJP2
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
Set publications
Eleanor Williams (Genomics England Curator)Publications for gene: TJP2 were set to PMID: 10601346; 11018256; 12403786; 12704386; 18172007; 18616530; 20602916; 24614073; 25921221; 7951235; 8824195
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Set Phenotypes
Ellen McDonagh (Genomics England Curator)Phenotypes for TJP2 were set to hearing loss; Nonsyndromic Hearing Loss, Dominant; Cholestasis, progressive familial intrahepatic 4, 615878; Hypercholanemia, familial, 607748
Set publications
Ellen McDonagh (Genomics England Curator)Publications for TJP2 were set to PMID: 10601346; 11018256; 12403786; 12704386; 18172007; 18616530; 20602916; 24614073; 25921221; 7951235; 8824195
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene TJP2 was changed to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Added New Source
Ellen McDonagh (Genomics England Curator)TJP2 was added to Congenital hearing impairment (Profound/Severe)panel. Sources: Illumina TruGenome Clinical Sequencing Services,UKGTN,Emory Genetics Laboratory,Radboud University Medical Center, Nijmegen,Expert
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene TJP2 was changed to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Added New Source
Ellen McDonagh (Genomics England Curator)TJP2 was added to Congenital hearing impairment (Profound/Severe)panel. Sources: Illumina TruGenome Clinical Sequencing Services,UKGTN,Emory Genetics Laboratory,Radboud University Medical Center, Nijmegen,Expert
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene TJP2 was changed to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Added New Source
Ellen McDonagh (Genomics England Curator)TJP2 was added to Congenital hearing impairment (Profound/Severe)panel. Sources: Illumina TruGenome Clinical Sequencing Services,UKGTN,Emory Genetics Laboratory,Radboud University Medical Center, Nijmegen,Expert
Set Mode of Inheritance
Ellen McDonagh (Genomics England Curator)Model of inheritance for gene TJP2 was changed to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Added New Source
Ellen McDonagh (Genomics England Curator)TJP2 was added to Congenital hearing impairment (Profound/Severe)panel. Sources: Illumina TruGenome Clinical Sequencing Services,UKGTN,Emory Genetics Laboratory,Radboud University Medical Center, Nijmegen,Expert
Added New Source
Ellen McDonagh (Genomics England Curator)TJP2 was added to Congenital hearing impairment (Profound/Severe)panel. Sources: Illumina TruGenome Clinical Sequencing Services,UKGTN,Emory Genetics Laboratory,Radboud University Medical Center, Nijmegen,Expert