Skeletal dysplasia
Gene: ALX3EnsemblGeneIds (GRCh38): ENSG00000156150
EnsemblGeneIds (GRCh37): ENSG00000156150
OMIM: 606014, Gene2Phenotype
ALX3 is in 9 panels
4 reviews
Tracy Lester (Genetics laboratory, Oxford UK)
disorder is defined as 2 or more of the following: (1) true ocular hypertelorism; (2) broadening of the nasal root; (3) median facial cleft affecting the nose and/or upper lip and palate; (4) unilateral or bilateral clefting of the alae nasi; (5) lack of formation of the nasal tip; (6) anterior cranium bifidum occultum (see 168500); and (7) a V-shaped or widow's peak frontal hairline, Dysostoses with predominant craniofacial involvement gp of SD. Green - Features confined to skull - >3 cases. Do you report variants in this gene as part of your current diagnostic practice? YES - FMD; Review on behalf of Tracy LesterCreated: 6 Mar 2019, 11:44 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Frontonasal dysplasia 1 136760 (frontorhiny)
Variants in this GENE are reported as part of current diagnostic practice
Eleanor Williams (Genomics England Curator)
Comment from Tracy Lester - ALX3 should stay on the skeletal dysplasia panel in the absence of a specific craniofacial panel. It is currently red on the Craniosynostosis panel (https://panelapp.genomicsengland.co.uk/panels/168/gene/ALX3/)Created: 28 Nov 2019, 11:20 a.m. | Last Modified: 28 Nov 2019, 11:20 a.m.
Panel Version: 1.244
This gene was part of an initial gene list collated by Tracy Lester, Oxford Medical Genetics Laboratories, Oxford University Hospitals NHS Foundation Trust, February 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: ALX3; Initial rating suggestion: greenCreated: 6 Mar 2019, 11:36 a.m.
Sarah Leigh (Genomics England Curator)
Comment when marking as ready: Associated with phenotype in OMIM and G2P. Numerous variants reportedCreated: 27 Jul 2016, 12:50 p.m.
Ana Beleza (Bristol Regional Genetics Service)
Tier 1Created: 17 Jun 2016, 8:01 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Frontonasal dysplasia 1 136760
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- NHS GMS
- Expert Review Green
- UKGTN
- Expert list
- Radboud University Medical Center, Nijmegen
- Phenotypes
-
- Frontonasal dysplasia 1 136760 (frontorhiny)
- Frontonasal dysplasia 1 136760
- OMIM
- 606014
- Clinvar variants
- Variants in ALX3
- Penetrance
- Complete
- Panels with this gene
History Filter Activity
Set Phenotypes
Eleanor Williams (Genomics England Curator)Added phenotypes Frontonasal dysplasia 1 136760 (frontorhiny) for gene: ALX3
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source NHS GMS was added to ALX3. Rating Changed from Green List (high evidence) to Green List (high evidence)
panel promoted to version 1
Sarah Leigh (Genomics England Curator)Promoted to version 1 9th August 2016
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for ALX3 were set to Frontonasal dysplasia 1 136760
Set Mode of Inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for ALX3 was changed to BIALLELIC, autosomal or pseudoautosomal
Upload gene information
Sarah Leigh (Genomics England Curator)ALX3 was added to Unexplained skeletal dysplasiapanel. Sources: Radboud University Medical Center, Nijmegen,UKGTN,Expert list
Added New Source
Sarah Leigh (Genomics England Curator)ALX3 was added to Unexplained skeletal dysplasiapanel. Sources:
Created
Sarah Leigh (Genomics England Curator)ALX3 was created by sleigh