Skeletal dysplasia
Gene: CTSCEnsemblGeneIds (GRCh38): ENSG00000109861
EnsemblGeneIds (GRCh37): ENSG00000109861
OMIM: 602365, Gene2Phenotype
CTSC is in 9 panels
4 reviews
Tracy Lester (Genetics laboratory, Oxford UK)
245010 not listed in SD nosology paper, but is associated with skeletal signs including arachnodactyly & acroosteolysis - at least families reported. Variants in this gene also associated with Papillon-Lefevre syndrome 245000, periodontitis 1, juvenile 170650.; Review on behalf of Tracy LesterCreated: 6 Mar 2019, 11:44 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Haim-Munk syndrome 245010,
Publications
Eleanor Williams (Genomics England Curator)
This gene was part of an initial gene list collated by Tracy Lester, Oxford Medical Genetics Laboratories, Oxford University Hospitals NHS Foundation Trust, February 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: CTSC; Initial rating suggestion: Green if 245010 is considered SDCreated: 6 Mar 2019, 11:36 a.m.
Sarah Leigh (Genomics England Curator)
Comment when marking as ready: Associated with phenotype in OMIM. At least four variants reportedCreated: 28 Jul 2016, 9:07 a.m.
Comment on phenotypes: Variants also reported in Papillon-Lefevre syndrome 245000 and Periodontitis 1, juvenile 170650Created: 28 Jul 2016, 8:55 a.m.
Ana Beleza (Bristol Regional Genetics Service)
Tier 1Created: 17 Jun 2016, 8:02 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Haim-Munk syndrome 245010; Papillon-Lefevre syndrome 245000; Periodontitis 1, juvenile 170650
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- NHS GMS
- Expert Review Green
- Expert list
- Illumina TruGenome Clinical Sequencing Services
- Radboud University Medical Center, Nijmegen
- Phenotypes
-
- Haim-Munk syndrome 245010,
- Haim-Munk syndrome 245010
- OMIM
- 602365
- Clinvar variants
- Variants in CTSC
- Penetrance
- Complete
- Publications
- Panels with this gene
-
- Palmoplantar keratoderma and erythrokeratodermas
- Primary immunodeficiency or monogenic inflammatory bowel disease
- Palmoplantar keratodermas
- Skeletal dysplasia
- Childhood onset dystonia, chorea or related movement disorder
- Likely inborn error of metabolism
- COVID-19 research
- Undiagnosed metabolic disorders
- Fetal anomalies
History Filter Activity
Set Phenotypes
Eleanor Williams (Genomics England Curator)Added phenotypes Haim-Munk syndrome 245010, for gene: CTSC
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source NHS GMS was added to CTSC. Rating Changed from Green List (high evidence) to Green List (high evidence)
panel promoted to version 1
Sarah Leigh (Genomics England Curator)Promoted to version 1 9th August 2016
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set publications
Sarah Leigh (Genomics England Curator)Publications for CTSC were set to 15727652; 26205983; 24966751
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for CTSC were set to Haim-Munk syndrome 245010
Set Mode of Inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for CTSC was changed to BIALLELIC, autosomal or pseudoautosomal
Upload gene information
Sarah Leigh (Genomics England Curator)CTSC was added to Unexplained skeletal dysplasiapanel. Sources: Expert list,Illumina TruGenome Clinical Sequencing Services,Radboud University Medical Center, Nijmegen
Created
Sarah Leigh (Genomics England Curator)CTSC was created by sleigh
Added New Source
Sarah Leigh (Genomics England Curator)CTSC was added to Unexplained skeletal dysplasiapanel. Sources: