Skeletal dysplasia
Gene: COL10A1EnsemblGeneIds (GRCh38): ENSG00000123500
EnsemblGeneIds (GRCh37): ENSG00000123500
OMIM: 120110, Gene2Phenotype
COL10A1 is in 5 panels
4 reviews
Tracy Lester (Genetics laboratory, Oxford UK)
In metaphyseal dysplasias gp of SD. Both nonsense and missense variants, primarily in C-terminal NC1 domain. Green; Review on behalf of Tracy LesterCreated: 6 Mar 2019, 11:44 a.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Metaphyseal chondrodysplasia, Schmid type 156500
Eleanor Williams (Genomics England Curator)
This gene was part of an initial gene list collated by Tracy Lester, Oxford Medical Genetics Laboratories, Oxford University Hospitals NHS Foundation Trust, February 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: COL10A1; Initial rating suggestion: GreenCreated: 6 Mar 2019, 11:36 a.m.
Sarah Leigh (Genomics England Curator)
Listed as associated with Skeletal Dysplasia by Gene Advisor (June 2016), Steve AbbsCreated: 27 Jul 2016, 9:28 a.m.
Comment when marking as ready: Associated with phenotype in G2P. Numerous variants reported in this phenotype.Created: 13 Jul 2016, 8:11 a.m.
Comment on list classification: Used diagnostically by Ana Beleza (Guy's and St Thomas' NHS Foundation Trust)Created: 21 Jun 2016, 12:36 p.m.
Ana Beleza (Bristol Regional Genetics Service)
Tier 1Created: 17 Jun 2016, 8:02 a.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Metaphyseal chondrodysplasia, Schmid type 156500
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
- Sources
-
- NHS GMS
- Expert Review Green
- Emory Genetics Laboratory
- Phenotypes
-
- Metaphyseal chondrodysplasia, Schmid type 156500
- OMIM
- 120110
- Clinvar variants
- Variants in COL10A1
- Penetrance
- Complete
- Panels with this gene
History Filter Activity
Set Phenotypes
Eleanor Williams (Genomics England Curator)Added phenotypes Metaphyseal chondrodysplasia, Schmid type 156500 for gene: COL10A1
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source NHS GMS was added to COL10A1. Rating Changed from Green List (high evidence) to Green List (high evidence)
panel promoted to version 1
Sarah Leigh (Genomics England Curator)Promoted to version 1 9th August 2016
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for COL10A1 were set to Metaphyseal chondrodysplasia, Schmid type 156500
Set Mode of Inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for COL10A1 was changed to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Added New Source
Sarah Leigh (Genomics England Curator)COL10A1 was added to Unexplained skeletal dysplasiapanel. Source: Emory Genetics Laboratory COL10A1 was added to Unexplained skeletal dysplasiapanel. Source: Expert Review Red
Added New Source
Sarah Leigh (Genomics England Curator)COL10A1 was added to Unexplained skeletal dysplasiapanel. Sources:
Created
Sarah Leigh (Genomics England Curator)COL10A1 was created by sleigh