Genes in panel

Early onset or syndromic epilepsy

Gene: PPP1R3F

Green List (high evidence)

PPP1R3F (protein phosphatase 1 regulatory subunit 3F)
EnsemblGeneIds (GRCh38): ENSG00000049769
EnsemblGeneIds (GRCh37): ENSG00000049769
PPP1R3F is in 3 panels

3 reviews

Eleanor Williams (Genomics England Curator)

Green List (high evidence)

The rating of this gene has been updated to green and the mode of inheritance set to 'X-LINKED: hemizygous mutation in males, biallelic mutations in females' following NHS Genomic Medicine Service approval.
Created: 2 May 2024, 1:13 p.m. | Last Modified: 6 May 2024, 9:23 p.m.
Panel Version: 5.6

Mode of inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females

Achchuthan Shanmugasundram (Genomics England Curator)

Green List (high evidence)

Comment on list classification: There are at least six patients reported with epilepsy and with hemizygious PPP1R3F variants and hence this gene should be promoted to green rating at the next GMS review.
Created: 13 Sep 2023, 1:37 p.m. | Last Modified: 13 Sep 2023, 7:17 p.m.
Panel Version: 4.97
PMID:37531237 - 13 unrelated males were identified with hemizygous variants in PPP1R3F gene and were reported with a novel X-linked recessive neurodevelopmental disorder. Six of these 13 patients were reported with heterogeneous seizure types including generalized, nocturnal, tonic, atonic, focal, myoclonic, and atypical absence.

This gene has not yet been associated with relevant phenotypes either in OMIM or in Gene2Phenotype.
Created: 13 Sep 2023, 1:24 p.m. | Last Modified: 13 Sep 2023, 7:16 p.m.
Panel Version: 4.97

Mode of inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females

Phenotypes
neurodevelopmental disorder, MONDO:0700092; epilepsy, MONDO:0005027

Publications

Zornitza Stark (Australian Genomics)

Green List (high evidence)

13 unrelated hemizygous individuals reported with functional evidence
Sources: Literature
Created: 7 Sep 2023, 7:15 a.m.

Mode of inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females

Phenotypes
Neurodevelopmental Disorder, MONDO:0700092,PPP1R3F-related

Publications

Details

Mode of Inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • NHS GMS
  • Literature
Phenotypes
  • neurodevelopmental disorder, MONDO:0700092
  • epilepsy, MONDO:0005027
Tags
gene-checked
Clinvar variants
Variants in PPP1R3F
Penetrance
None
Publications
Panels with this gene

History Filter Activity

9 May 2024, Gel status: 3

Added Tag

Eleanor Williams (Genomics England Curator)

Tag gene-checked tag was added to gene: PPP1R3F.

2 May 2024, Gel status: 3

Removed Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q3_23_promote_green was removed from gene: PPP1R3F.

2 May 2024, Gel status: 3

Added New Source, Added New Source, Status Update

Achchuthan Shanmugasundram (Genomics England Curator)

Source NHS GMS was added to PPP1R3F. Source Expert Review Green was added to PPP1R3F. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

13 Sep 2023, Gel status: 2

Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

Phenotypes for gene: PPP1R3F were changed from neurodevelopmental disorder, MONDO:0700092; intellectual disability, MONDO:0001071 to neurodevelopmental disorder, MONDO:0700092; epilepsy, MONDO:0005027

13 Sep 2023, Gel status: 2

Created, Added New Source, Added Tag, Set mode of inheritance, Set publications, Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

gene: PPP1R3F was added gene: PPP1R3F was added to Early onset or syndromic epilepsy. Sources: Expert Review Amber,Literature Q3_23_promote_green tags were added to gene: PPP1R3F. Mode of inheritance for gene: PPP1R3F was set to X-LINKED: hemizygous mutation in males, biallelic mutations in females Publications for gene: PPP1R3F were set to 37531237 Phenotypes for gene: PPP1R3F were set to neurodevelopmental disorder, MONDO:0700092; intellectual disability, MONDO:0001071