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Adult onset neurodegenerative disorder

Region: ISCA-37446-Loss

22q11.2 recurrent (DGS/VCFS) region (proximal, A-D) (includes TBX1) Loss

Amber List (moderate evidence)

Chromosome: 22
GRCh38 Position: 18924718-21111383
Haploinsufficiency Score: Sufficient evidence suggesting dosage sensitivity is associated with clinical phenotype
Triplosensitivity Score:
Required percent of overlap: 60%
Variant types: CNV Loss

2 reviews

Arina Puzriakova (Genomics England Curator)

Green List (high evidence)

Comment on list classification: There is sufficient evidence to support this gene-disease association. Several cases with 22q11.2 deletions and Parkinson's disease with or without other features of DiGeorge syndrome have been reported. This is a very variable condition and most case would probably be picked up via other routes, as highlighted by Lauren Turton. However, sufficient numbers have presented where parkinsonism was the primary reason for referral, including the case in Sheffield and in the published literature (PMID: 24018986; 27017469).

Although there is sufficient evidence for inclusion, all regions were removed from this panel in 2020 'as testing is not achievable using currently available methodology' (see comment on other regions). It would be worth reviewing whether this is still the case and therefore this region has been tagged for GMS expert review.

If it is agreed that regions can now be included, other regions on this panel should also be revisited to determine whether they should be re-added.
Created: 28 Oct 2025, 10:29 a.m. | Last Modified: 28 Oct 2025, 10:29 a.m.
Panel Version: 8.8

Lauren Turton (Sheffield Diagnostics Genetics Service)

I don't know

PMID: 24018986 159 adults diagnosed with 22q11.2DS. Four of 68 subjects (5.9%) aged 35 to 64 years with 22q11.2 deletions had been diagnosed as having PD (standardized morbidity ratio = 91.7; 95% CI, 25.0–234.8). Prevalence 5.9% in this cohort, however many of the individuals in 18-34 age group (n=90).

PMID: 27017469 We included array-based copy number variation data from 9387 patients with Parkinson's disease and 13 863 controls. Eight patients with Parkinson's disease and none of the controls had 22q11.2 deletions (p=0·00082). In the 8451 patients for whom age at onset data were available, deletions at 22q11.2 were associated with Parkinson's disease age at onset (Mann-Whitney U test p=0·001).

In Sheffield we also have a case with DiGeorge syndrome, that was referred for genetic testing due to parkinsonism as the primary referral reason. The patient also had other clinical features compatible with DiGeorge syndrome.

Added as amber as it is likely these patients will have other features that make them eligible for alternative panels such as R29.
Sources: NHS GMS
Created: 29 May 2025, 9:01 a.m.

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
DIGEORGE SYNDROME; DGS (OMIM: 188400)

Publications

Variants in this REGION are reported as part of current diagnostic practice

Details

ISCA ID
ISCA-37446-Loss
ISCA Region Name
22q11.2 recurrent (DGS/VCFS) region (proximal, A-D) (includes TBX1) Loss
Chromosome
22
GRCh38 Coordinates
18924718-21111383
Haploinsufficiency Score
Sufficient evidence suggesting dosage sensitivity is associated with clinical phenotype
Triplosensitivity Score
Required percent of overlap
60%
Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
Phenotypes
  • DiGeorge syndrome, OMIM:188400
  • Parkinsonism, HP:0001300
Tags
Q3_25_promote_green Q3_25_expert_review Q3_25_NHS_review
Clinvar variants
Variants in
Penetrance
Complete
Variant types
CNV Loss
Publications

History Filter Activity

28 Oct 2025, Gel status: 2

Added Tag, Added Tag, Added Tag

Arina Puzriakova (Genomics England Curator)

Tag Q3_25_promote_green tag was added to Region: ISCA-37446-Loss. Tag Q3_25_expert_review tag was added to Region: ISCA-37446-Loss. Tag Q3_25_NHS_review tag was added to Region: ISCA-37446-Loss.

28 Oct 2025, Gel status: 2

Set Phenotypes

Arina Puzriakova (Genomics England Curator)

Phenotypes for Region: ISCA-37446-Loss were changed from DIGEORGE SYNDROME; DGS (OMIM: 188400) to DiGeorge syndrome, OMIM:188400; Parkinsonism, HP:0001300

28 Oct 2025, Gel status: 2

Entity classified by Genomics England curator

Arina Puzriakova (Genomics England Curator)

Region: isca-37446-loss has been classified as Amber List (Moderate Evidence).

29 May 2025, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance

Lauren Turton (Sheffield Diagnostics Genetics Service)

Region: ISCA-37446-Loss was added Region: ISCA-37446-Loss was added to Adult onset neurodegenerative disorder. Sources: NHS GMS Mode of inheritance for Region: ISCA-37446-Loss was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for Region: ISCA-37446-Loss were set to 24018986; 27017469 Phenotypes for Region: ISCA-37446-Loss were set to DIGEORGE SYNDROME; DGS (OMIM: 188400) Penetrance for Region: ISCA-37446-Loss were set to Complete Review for Region: ISCA-37446-Loss was set to AMBER Region: ISCA-37446-Loss was marked as current diagnostic