Genes in panel

Neurodegenerative disorders, adult onset

Gene: SIGMAR1

Amber List (moderate evidence)

SIGMAR1 (sigma non-opioid intracellular receptor 1)
EnsemblGeneIds (GRCh38): ENSG00000147955
EnsemblGeneIds (GRCh37): ENSG00000147955
OMIM: 601978, Gene2Phenotype
SIGMAR1 is in 6 panels

6 reviews

Luke Stuart (Genomics England Curator)

I don't know

SIGMAR1 is provisionally associated with autosomal recessive Amyotrophic lateral sclerosis 16, juvenile (OMIM:614373) and Neuronopathy, distal hereditary motor, autosomal recessive 2 (OMIM:605726) (accessed 10/2026). Multiple patients with biallelic variants have been identified, and disease onset is typically in the first decade (Kalita et al. (2025), PMID 41334667; Al-Saif et al. (2011), PMID 21842496, Horga et al. (2016) PMID 27629094). Disruption of Sigmar1 in the mouse leads to locomotor deficit (Bernard-Marissal et al. (2015), PMID 25678561).

Biallelic SIGMAR1 variants typically cause a phenotypic spectrum encompassing juvenile ALS16 and distal hereditary motor neuropathy with pyramidal signs. Recent evidence supports a spectrum of SIGMAR1-related motor neuropathy, with the slowly progressive, distal-predominant phenotype generally favouring dHMN over classical ALS (Yu et al. (2025), PMID 40309037; Kalita et al. (2025), PMID 41334667)).

Adult presentation is documented in isolated cases. Ma et al. (2020), PMID 32600828 reported onset at 34 years in a patient with compound-heterozygous c.247T>C and c.545T>C variants who was referred to an ALS clinic with distal weakness and hyperreflexia; the authors classified the phenotype as dHMN mimicking ALS. An additional Japanese patient developed ALS at 80 years with compound-heterozygous missense variants, though notably, one of the variants (p.R208W) has an allele frequency of 2.9% in East Asians via gnomad v4 and 64 homozygotes across all populations (Izumi et al. (2018), PMID 30311446). Evidence implicating SIGMAR1 in typical adult-onset ALS or ALS–FTD remains disputed (Pickering-Brown et al. (2015), PMID 26088964). SIGMAR1 c.672*51G>T was identified in 3 families with ALS-FTD, though later studies found one of the families also to harbored a C9ORF72 expansion (Luty et al. (2010), PMID 21031579.

As reviewed by Oliver Ziff, despite typical childhood onset, SIGMAR1-related disease can thus present in adulthood or enter an adult ALS/LMN pathway because of overlapping clinical presentation. NHS England review is ongoing to determine whether SIGMAR1 falls within the intended scope of the adult-onset neurodegenerative disorders panel, based on potential diagnostic utility rather than a definitive association with adult-onset neurodegeneration.
Created: 1 Oct 2026, 2:12 p.m. | Last Modified: 6 Oct 2026, 10:25 a.m.
Panel Version: 9.22

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Autosomal recessive amyotrophic lateral sclerosis 16, juvenile (OMIM:614373); Neuronopathy, distal hereditary motor, autosomal recessive 2 (OMIM:605726); amyotrophic lateral sclerosis type 16 (MONDO:0013715)

Publications

Oliver Ziff (University College London)

Green List (high evidence)

SIGMAR1 variants are a recognized cause of juvenile and early-adult onset ALS (ALS16) as well as distal hereditary motor neuropathy. Essential for upfront LMN screening to prevent sequential R78 testing after R460.1.
Created: 22 May 2026, 1:08 p.m. | Last Modified: 22 May 2026, 1:08 p.m.
Panel Version: 9.1

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Neuropathy, distal hereditary motor, type IIB, OMIM:608634; Charcot-Marie-Tooth disease, type 2F, OMIM:606595

Publications

Mode of pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments

Tracy Lester (Genetics laboratory, Oxford UK)

Red List (low evidence)

early-childhood onset of a neurologic disorder consistent with juvenile ALS, or Distal spinal muscular atrophy-2 is an autosomal recessive neuromuscular disorder characterized by onset of distal muscle weakness and wasting affecting the lower and upper limbs in the first decade. Both childhood onset - red
Created: 2 Sep 2019, 4:06 p.m. | Last Modified: 2 Sep 2019, 4:06 p.m.
Panel Version: 1.99

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Amyotrophic lateral sclerosis 16, juvenile, 614373

Nick Beauchamp (Sheffield Diagnostic Genetics Service)

Green List (high evidence)

Includes variants in 3'UTR of gene.
Created: 23 Jul 2019, 3:35 p.m. | Last Modified: 23 Jul 2019, 3:35 p.m.
Panel Version: 1.72

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Amyotrophic lateral sclerosis 16, juvenile, 614373

Publications

Variants in this GENE are reported as part of current diagnostic practice

Louise Daugherty (Genomics England Curator)

I don't know

As discussed with the GMS Neurology Specialist Test Group webex call 11th September 2019: The Specialist Test Group all agreed that there is only enough evidence to rate this gene Amber
Created: 20 Sep 2019, 4:19 p.m. | Last Modified: 20 Sep 2019, 4:19 p.m.
Panel Version: 1.106
Review and rating from Tracy Lester (Oxford Medical Genetics Laboratories Oxford University Hospitals NHS Foundation Trust) on behalf of Wessex and West Midlands GLH for GMS Neurology specialist test group. All the green and amber, except for the genes with triplet repeats, were reviewed.
Created: 2 Sep 2019, 4:46 p.m. | Last Modified: 2 Sep 2019, 4:46 p.m.
Panel Version: 1.101
Review and rating submitted by Nick Beauchamp (Sheffield Diagnostic genetics Service), on behalf of Yorkshire and North East GLH for GMS Neurology specialist test group.
Created: 23 Jul 2019, 3:51 p.m. | Last Modified: 23 Jul 2019, 3:51 p.m.
Panel Version: 1.74
Review and rating submitted byJames Polke (North Bristol NHS Trust), unless specified in the review comment, on behalf of London North GLH for GMS Neurology specialist test group.
Created: 23 Apr 2019, 5:35 p.m.

James Polke (Neurogenetics Laboratory, Institute of Neurology, London)

Green List (high evidence)

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Wessex and West Midlands GLH
  • Yorkshire and North East GLH
  • NHS GMS
  • London North GLH
Phenotypes
  • Autosomal recessive amyotrophic lateral sclerosis 16, juvenile, OMIM:614373
  • Neuronopathy, distal hereditary motor, autosomal recessive 2, OMIM:605726
  • amyotrophic lateral sclerosis type 16, MONDO:0013715
OMIM
601978
Clinvar variants
Variants in SIGMAR1
Penetrance
None
Publications
Panels with this gene

History Filter Activity

6 Oct 2026, Gel status: 2

Removed Tag, Removed Tag, Removed Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q3_26_expert_review was removed from gene: SIGMAR1. Tag Q3_26_NHS_review was removed from gene: SIGMAR1. Tag Q3_26_promote_green was removed from gene: SIGMAR1.

2 Oct 2026, Gel status: 2

Entity classified by Genomics England curator

Achchuthan Shanmugasundram (Genomics England Curator)

Gene: sigmar1 has been classified as Amber List (Moderate Evidence).

2 Oct 2026, Gel status: 2

Set publications

Achchuthan Shanmugasundram (Genomics England Curator)

Publications for gene: SIGMAR1 were set to 21031579; 21842496; 25678561; 26078401; 26088963; 26088964; 27629094; 27821430; 30311446; 32600828; 326088964; 40309037; 41334667

2 Oct 2026, Gel status: 2

Set publications

Achchuthan Shanmugasundram (Genomics England Curator)

Publications for gene: SIGMAR1 were set to 26088964; 26078401; 21031579; 26088963; 21842496; 27821430

2 Oct 2026, Gel status: 2

Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

Phenotypes for gene: SIGMAR1 were changed from ?Amyotrophic lateral sclerosis 16, juvenile, OMIM:614373 to Autosomal recessive amyotrophic lateral sclerosis 16, juvenile, OMIM:614373; Neuronopathy, distal hereditary motor, autosomal recessive 2, OMIM:605726; amyotrophic lateral sclerosis type 16, MONDO:0013715

2 Oct 2026, Gel status: 2

Added Tag, Added Tag, Added Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q3_26_expert_review tag was added to gene: SIGMAR1. Tag Q3_26_NHS_review tag was added to gene: SIGMAR1. Tag Q3_26_promote_green tag was added to gene: SIGMAR1.

29 Mar 2021, Gel status: 2

Set Phenotypes

Ivone Leong (Genomics England Curator)

Phenotypes for gene: SIGMAR1 were changed from Amyotrophic lateral sclerosis 16, juvenile, 614373 to ?Amyotrophic lateral sclerosis 16, juvenile, OMIM:614373

20 Sep 2019, Gel status: 2

Added New Source, Status Update

Louise Daugherty (Genomics England Curator)

Source Expert Review Amber was added to SIGMAR1. Rating Changed from Green List (high evidence) to Amber List (moderate evidence)

2 Sep 2019, Gel status: 3

Added New Source

Louise Daugherty (Genomics England Curator)

Source Wessex and West Midlands GLH was added to SIGMAR1.

23 Jul 2019, Gel status: 3

Set publications

Louise Daugherty (Genomics England Curator)

Publications for gene SIGMAR1 were changed from PMID: 26078401 - c.151+1G>T variant in SIGMARI resulted in a 60 bp deletion in the transcript, and segrated with the distal hereditary motor neuropathy in a Chinese family.; PubMed: 21842496 - E102Q variant identified in a Saudi Arabian family to be associated with amyotrophic lateral sclerosis 16, juvenile; PMID: 26088964 is a commentary on PMID: 25678561 raising a lack of evidence for SIGMARI to be pathogenic, and that previous reports of patients with SIGMARI variants were also shown to harbour C9orf72 expansions; PMID: 26088963 - in reply, authors state that there is in vitro and in vivo evidence, and expression evidence, and that a case reported did not have the C9orf72 expansion; PMID: 26205306 one family report for association with Amyotrophic lateral sclerosis and c.672*31A>G (rs4879809) - the C9ORF72 repeat region in intron 1, previously implicated in a related phenotype, was excluded through linkage, and further confirmation of exclusion was obtained by amplifying intron 1 of C9ORF72 with multiple primers in affected individuals and controls to 26088964; 26078401; 21031579; 26088963; 21842496; 27821430

23 Jul 2019, Gel status: 3

Added New Source

Louise Daugherty (Genomics England Curator)

Source Yorkshire and North East GLH was added to SIGMAR1.

23 Apr 2019, Gel status: 4

Added New Source

Louise Daugherty (Genomics England Curator)

Source NHS GMS was added to SIGMAR1.

23 Apr 2019, Gel status: 4

Added New Source

Louise Daugherty (Genomics England Curator)

Source London North GLH was added to SIGMAR1.

25 Jan 2019, Gel status: 4

Panel promoted to version 1.0

Louise Daugherty (Genomics England Curator)

Louise Daugherty: Comment on phenotypes: amended

18 Dec 2018, Gel status: 4

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Rebecca Foulger (Genomics England curator)

gene: SIGMAR1 was added gene: SIGMAR1 was added to Neurodegenerative disorders - adult onset. Sources: Expert Review Green Mode of inheritance for gene: SIGMAR1 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: SIGMAR1 were set to PMID: 26078401 - c.151+1G>T variant in SIGMARI resulted in a 60 bp deletion in the transcript, and segrated with the distal hereditary motor neuropathy in a Chinese family.; PubMed: 21842496 - E102Q variant identified in a Saudi Arabian family to be associated with amyotrophic lateral sclerosis 16, juvenile; PMID: 26088964 is a commentary on PMID: 25678561 raising a lack of evidence for SIGMARI to be pathogenic, and that previous reports of patients with SIGMARI variants were also shown to harbour C9orf72 expansions; PMID: 26088963 - in reply, authors state that there is in vitro and in vivo evidence, and expression evidence, and that a case reported did not have the C9orf72 expansion; PMID: 26205306 one family report for association with Amyotrophic lateral sclerosis and c.672*31A>G (rs4879809) - the C9ORF72 repeat region in intron 1, previously implicated in a related phenotype, was excluded through linkage, and further confirmation of exclusion was obtained by amplifying intron 1 of C9ORF72 with multiple primers in affected individuals and controls Phenotypes for gene: SIGMAR1 were set to Amyotrophic lateral sclerosis 16, juvenile, 614373