Ehlers Danlos syndrome with a likely monogenic cause
Gene: ATP7AEnsemblGeneIds (GRCh38): ENSG00000165240
EnsemblGeneIds (GRCh37): ENSG00000165240
OMIM: 300011, Gene2Phenotype
ATP7A is in 19 panels
6 reviews
Ivone Leong (Genomics England Curator)
Comment on phenotypes: This gene is also associated with Menkes disease, OMIM:309400, Connective Tissues Disorders and Cutis laxaCreated: 18 Mar 2021, 1:25 p.m. | Last Modified: 18 Mar 2021, 1:25 p.m.
Panel Version: 2.10
Duncan Baker (Sheffield Genetics)
Eleanor Williams (Genomics England Curator)
This gene was part of an initial gene list collated by Duncan Baker, Sheffield Diagnostic Genetics Service, January 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: ATP7A; Suggested initial gene rating: greenCreated: 3 Apr 2019, 3:41 p.m.
Angela Brady (Nhs)
Neeti Ghali (NWTRGS, Northwick Park Hospital)
Louise Daugherty (Genomics England Curator)
Update: it was decided to keep on panel as can present with clinical features overlapping with EDSCreated: 12 May 2017, 8:25 a.m.
Comment on list classification: Changed from Red to Green as there is enough evidence in the literature to support the phenotypesCreated: 11 May 2017, 12:07 p.m.
Comment on publications: Associated with phenotypes in OMIM and as a confirmed G2P for each condition. At least 8 variants reported in Menkes disease, 6 variants in Occipital horn syndrome and 2 variants in Spinal muscular atrophy, distal, X-linked, 3.Created: 11 May 2017, 12:06 p.m.
Update: it was decided to keep on panel as can present with clinical features overlapping with EDSCreated: 11 May 2017, 12:03 p.m.
Comment on phenotypes: Menkes disease includes Joint laxity and Skin laxity phenotype and
Occipital horn syndrome (inludes Joint laxity / Mildly extensible skin. If this panel eligibly statement was expanded to cover other connective tissue types then these genes should be reviewed. Check with clinical team for possible inclusion.
Created: 7 May 2017, 12:04 p.m.
ATP7A is no longer considered since Occipital horn syndrome variants of ATP7A are no longer be included in EDS spectrum anymore (PMID:28306229)
Created: 7 May 2017, noon
Details
- Mode of Inheritance
- X-LINKED: hemizygous mutation in males, biallelic mutations in females
- Sources
-
- NHS GMS
- Expert Review Green
- Expert list
- Phenotypes
-
- Occipital horn syndrome, OMIM:304150
- OMIM
- 300011
- Clinvar variants
- Variants in ATP7A
- Penetrance
- Complete
- Publications
- Panels with this gene
-
- Childhood onset dystonia, chorea or related movement disorder
- White matter disorders and cerebral calcification - narrow panel
- Rare genetic inflammatory skin disorders
- Hereditary neuropathy
- Thoracic aortic aneurysm or dissection (GMS)
- Early onset or syndromic epilepsy
- DDG2P
- Intellectual disability
- Inherited white matter disorders
- Cerebral vascular malformations
- Pneumothorax - familial
- Likely inborn error of metabolism
- Paediatric motor neuronopathies
- Thoracic aortic aneurysm or dissection
- Ehlers Danlos syndrome with a likely monogenic cause
- Fetal anomalies
- Hereditary neuropathy or pain disorder
- Undiagnosed metabolic disorders
- Skeletal dysplasia
History Filter Activity
Set Phenotypes
Ivone Leong (Genomics England Curator)Phenotypes for gene: ATP7A were changed from Menkes disease, 309400; Occipital horn syndrome, 304150; Connective Tissues Disorders; Cutis laxa to Occipital horn syndrome, OMIM:304150
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source NHS GMS was added to ATP7A. Rating Changed from Green List (high evidence) to Green List (high evidence)
panel promoted to version 1
Louise Daugherty (Genomics England Curator)25 July 2017 Panel reviews were assessed, and panel was revised according to reviews and further curation.
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set publications
Louise Daugherty (Genomics England Curator)Publications for ATP7A were set to 28306229;27604308;10739752;11431706;20170900
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for ATP7A were set to Menkes disease, 309400; Occipital horn syndrome, 304150; Connective Tissues Disorders; Cutis laxa
Set Mode of Inheritance
Louise Daugherty (Genomics England Curator)Mode of inheritance for ATP7A was changed to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for ATP7A were set to Menkes disease, 309400;Occipital horn syndrome, 304150
Set publications
Louise Daugherty (Genomics England Curator)Publications for ATP7A were set to 28306229
Added New Source
Ellen McDonagh (Genomics England Curator)ATP7A was added to Ehlers-Danlos syndromespanel. Sources: Expert list
Created
Ellen McDonagh (Genomics England Curator)ATP7A was created by ellenmcdonagh