Ehlers Danlos syndrome with a likely monogenic cause
Gene: SMAD4EnsemblGeneIds (GRCh38): ENSG00000141646
EnsemblGeneIds (GRCh37): ENSG00000141646
OMIM: 600993, Gene2Phenotype
SMAD4 is in 23 panels
5 reviews
Eleanor Williams (Genomics England Curator)
Comment on list classification: Following discussion in the GMS musculoskeletal specialist test group Webex on 2019-06-04, it was decided to remove this gene from the panel as there is not enough overlap with the EDS phenotype.Created: 11 Jun 2019, 11:09 a.m.
This gene was part of an initial gene list collated by Duncan Baker, Sheffield Diagnostic Genetics Service, January 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: SMAD4; Suggested initial gene rating: redCreated: 3 Apr 2019, 3:41 p.m.
Duncan Baker (Sheffield Genetics)
D/w Dr Diana Johnson, not enough overlap with EDS features.
e.g. PMID: 24525918: Seven of the 34 individuals in the study (21%), from five separate families, had documented evidence of connective tissue findings.Created: 24 Jan 2019, 11:51 a.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
juvenile polyposis syndrome (JP) and hereditary hemorrhagic telangiectasia (HHT); ~20% with connective tissue features.
Angela Brady (Nhs)
Neeti Ghali (NWTRGS, Northwick Park Hospital)
Louise Daugherty (Genomics England Curator)
In consultation with the clinical team it was decided to include this gene, due to the clinical overlap of the phenotype with EDSCreated: 24 May 2017, 1:11 p.m.
Refer to clinical team for further discussion on wether we should include this gene on the EDS panel. There is clinical overlap between EDS and other Heritable Connective Tissue Disorders.Created: 28 Apr 2017, 11:50 a.m.
SMAD4 is part of the TGFβ pathway with integral role of the latter in Thoracic Aortic Aneurysms and Aortic Dissections (TAAD), including Marfan and Loeys-Dietz syndrome.Created: 26 Apr 2017, 12:29 p.m.
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Expert Review Removed
- NHS GMS
- Radboud University Medical Center, Nijmegen
- Illumina TruGenome Clinical Sequencing Services
- Expert list
- Phenotypes
-
- Juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome, 175050
- juvenile polyposis syndrome (JP) and hereditary hemorrhagic telangiectasia (HHT)
- ~20% with connective tissue features.
- Tags
- OMIM
- 600993
- Clinvar variants
- Variants in SMAD4
- Penetrance
- Complete
- Publications
- Panels with this gene
-
- Vascular skin disorders
- Thoracic aortic aneurysm or dissection (GMS)
- Pulmonary arterial hypertension
- Bleeding and platelet disorders
- DDG2P
- Intellectual disability
- Clefting
- Cerebral vascular malformations
- Colorectal cancer pertinent cancer susceptibility
- Adult solid tumours for rare disease
- GI tract tumours
- Childhood solid tumours
- Adult solid tumours cancer susceptibility
- Thoracic aortic aneurysm or dissection
- Structural eye disease
- Arthrogryposis
- Inherited bleeding disorders
- Ehlers Danlos syndrome with a likely monogenic cause
- Inherited polyposis and early onset colorectal cancer - germline testing
- Fetal anomalies
- Skeletal dysplasia
- Hereditary haemorrhagic telangiectasia
- Childhood solid tumours cancer susceptibility
History Filter Activity
Added Tag
Arina Puzriakova (Genomics England Curator)Tag curated_removed tag was added to gene: SMAD4.
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: smad4 has been removed from the panel.
Set Phenotypes
Eleanor Williams (Genomics England Curator)Phenotypes for gene: SMAD4 were changed from Juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome, 175050 to Juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome, 175050; juvenile polyposis syndrome (JP) and hereditary hemorrhagic telangiectasia (HHT); ~20% with connective tissue features.
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source NHS GMS was added to SMAD4. Rating Changed from Green List (high evidence) to Green List (high evidence)
panel promoted to version 1
Louise Daugherty (Genomics England Curator)25 July 2017 Panel reviews were assessed, and panel was revised according to reviews and further curation.
Upload gene information
Louise Daugherty (Genomics England Curator)SMAD4 was added to Ehlers-Danlos syndromespanel. Sources: Illumina TruGenome Clinical Sequencing Services,Radboud University Medical Center, Nijmegen
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set publications
Louise Daugherty (Genomics England Curator)Publications for SMAD4 were set to 26699655; 23239472; 25931195;21465659
Set Mode of Inheritance
Louise Daugherty (Genomics England Curator)Mode of inheritance for SMAD4 was changed to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for SMAD4 were set to Juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome, 175050
Set publications
Louise Daugherty (Genomics England Curator)Publications for SMAD4 were set to 26699655; 23239472;25931195
Set publications
Louise Daugherty (Genomics England Curator)Publications for SMAD4 were set to 26699655; 23239472;25931195
Added New Source
Ellen McDonagh (Genomics England Curator)SMAD4 was added to Ehlers-Danlos syndromespanel. Sources: Expert list
Created
Ellen McDonagh (Genomics England Curator)SMAD4 was created by ellenmcdonagh