Laterality disorders and isomerism
Gene: PKD1L1EnsemblGeneIds (GRCh38): ENSG00000158683
EnsemblGeneIds (GRCh37): ENSG00000158683
OMIM: 609721, Gene2Phenotype
PKD1L1 is in 5 panels
4 reviews
Ivone Leong (Genomics England Curator)
The rating of this gene has been updated following NHS Genomic Medicine Service approval.Created: 8 Mar 2022, 11:09 a.m. | Last Modified: 8 Mar 2022, 11:09 a.m.
Panel Version: 1.47
This gene is associated with the appropriate phenotype in OMIM and Gen2Phen. There are 3 cases (PMID: 31026592, 27616478) that support a gene-disease association. There are also several mouse and fish models (PMID: 20080492, 21307093, 27272319) that show that this gene is involved with L-R patterning. There is enough evidence for this gene to be promoted to Green and this will happen at the next major review of this panel.Created: 8 Sep 2020, 9:47 a.m. | Last Modified: 8 Sep 2020, 9:47 a.m.
Panel Version: 1.16
Zornitza Stark (Australian Genomics)
Additional family reported.Created: 30 Jul 2020, 10:08 a.m. | Last Modified: 30 Jul 2020, 10:08 a.m.
Panel Version: 1.8
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Heterotaxy, visceral, 8, autosomal (MIM#617205)
Publications
Anna de Burca (Oxford University Hospitals NHS Foundation Trust)
Comment on list classification: Rated as amber following discussion with NHS GMS respiratory specialist test group 18/01/19.Created: 18 Jan 2019, 9:56 p.m.
Louise Daugherty (Genomics England Curator)
From GMS Respiratory Specialist Test Group webex call 18th Jan 2019 : Ian Berry to add supporting publications/MOI/Phenotype and to confirm Amber or Green rating.Created: 21 Jan 2019, 4:48 p.m.
Initial gene list and info collated by Ian Berry Leeds Genetics Laboratory November 2018 on behalf of the GMS Respiratory specialist test group. Gene Symbol submitted: PKD1L1; Suggested initial gene rating: Green; Evidence for inclusion: OMIM PCD or Visceral heterotaxy gene; Evidence for exclusion: none given; Technical notes (e.g. non-coding/CNV mutations requiring coverage?): none givenCreated: 5 Dec 2018, 12:52 p.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- NHS GMS
- Phenotypes
-
- Heterotaxy, visceral, 8, autosomal, 617205
- OMIM
- 609721
- Clinvar variants
- Variants in PKD1L1
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Removed Tag
Ivone Leong (Genomics England Curator)Tag for-review was removed from gene: PKD1L1.
Added New Source, Status Update
Ivone Leong (Genomics England Curator)Source Expert Review Green was added to PKD1L1. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)
Added Tag
Ivone Leong (Genomics England Curator)Tag for-review tag was added to gene: PKD1L1.
Set publications
Ivone Leong (Genomics England Curator)Publications for gene: PKD1L1 were set to 31026592; 27616478
Set mode of inheritance
Ivone Leong (Genomics England Curator)Mode of inheritance for gene: PKD1L1 was changed from to BIALLELIC, autosomal or pseudoautosomal
Set publications
Ivone Leong (Genomics England Curator)Publications for gene: PKD1L1 were set to 31026592
Set publications
Ivone Leong (Genomics England Curator)Publications for gene: PKD1L1 were set to
Set Phenotypes
Ivone Leong (Genomics England Curator)Phenotypes for gene: PKD1L1 were changed from to Heterotaxy, visceral, 8, autosomal, 617205
Entity classified by Genomics England curator
Anna de Burca (Oxford University Hospitals NHS Foundation Trust)Gene: pkd1l1 has been classified as Amber List (Moderate Evidence).
Added New Source, Status Update
Louise Daugherty (Genomics England Curator)Source Expert Review Green was added to PKD1L1. Rating Changed from Red List (low evidence) to Green List (high evidence)
Created, Added New Source, Set mode of inheritance
Louise Daugherty (Genomics England Curator)gene: PKD1L1 was added gene: PKD1L1 was added to Laterality disorders and isomerism. Sources: NHS GMS Mode of inheritance for gene: PKD1L1 was set to